View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10585_low_3 (Length: 392)
Name: NF10585_low_3
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10585_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 2516168 - 2515802
Alignment:
| Q |
18 |
aaacaagtggttgttgttgctcgtgaatagaaagcatttgtttttcctatgtattgttatgttgtcaattttttcaaatcctttctagaaagtttagctg |
117 |
Q |
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| T |
2516168 |
aaacaagtggttgttgttgctcgtgaatagaaagcatttgtttttcctatgttttgttatgttgtcaattttttcaaatcttttctagaaagtttagctg |
2516069 |
T |
|
| Q |
118 |
tctttataccaccttggtagtcatcttttttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516068 |
tctttataccaccttggtagtcatcttttttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgt |
2515969 |
T |
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| Q |
218 |
tattgttagagaataaaagcatttacttccttttctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcg |
317 |
Q |
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| T |
2515968 |
tattgttagagaataaaagcatttacttccttttctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgca |
2515869 |
T |
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| Q |
318 |
ttcacatgtatggtatactccaacaccgacacatcacatgtgattacattcaatcagttttcttctc |
384 |
Q |
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| T |
2515868 |
ttcacatgtatggtatactccaacaccgacacatcacatgtgattacattcaatcagtttttttctc |
2515802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 2496595 - 2496344
Alignment:
| Q |
18 |
aaacaagtggttgttgttgctcgtgaatagaaagcatttgtttttcctatgtattgttatgttgtcaatt-ttttcaaatcctttctagaaagtttagct |
116 |
Q |
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|||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||| | |
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| T |
2496595 |
aaacaagtggttgtcgttgctcgggaatagaaagcatttgcttttcctatgtattgttatgttgtcaatttttttcaaatcttttatagaatgtttagtt |
2496496 |
T |
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| Q |
117 |
gtctttataccaccttggtagtcatcttttttcatatctatgaat-----atatgatgaga-ctgtgttcctgataatccagggagctgtgtaatctttt |
210 |
Q |
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|||||| |||||| || | ||||||| |||||||||| ||||||| ||||||||||| |||||||||||||| | ||||||||||| |||| | || |
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| T |
2496495 |
gtctttgtaccacttttgcagtcatc-tttttcatatgtatgaatgtatgatatgatgagacctgtgttcctgatagttcagggagctgtataatgtatt |
2496397 |
T |
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| Q |
211 |
atggtgttattgttagagaataaaagcatttacttccttttctgcattgtcatct |
265 |
Q |
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| T |
2496396 |
a--gtgttattgatagaaaataaaagcatttgcttgcctttgtgcattgtcatct |
2496344 |
T |
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