View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10585_low_5 (Length: 307)

Name: NF10585_low_5
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10585_low_5
NF10585_low_5
[»] chr4 (2 HSPs)
chr4 (20-292)||(10124160-10124432)
chr4 (47-251)||(28649788-28649992)
[»] chr2 (3 HSPs)
chr2 (43-254)||(21393062-21393273)
chr2 (43-292)||(21422334-21422587)
chr2 (157-260)||(1975176-1975279)
[»] chr3 (4 HSPs)
chr3 (34-285)||(25044298-25044549)
chr3 (56-285)||(25040582-25040811)
chr3 (47-260)||(54479360-54479573)
chr3 (79-285)||(25042759-25042958)
[»] chr1 (1 HSPs)
chr1 (79-285)||(24690534-24690740)
[»] chr7 (1 HSPs)
chr7 (127-200)||(39600467-39600540)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 10124160 - 10124432
Alignment:
Q  20 cctaattctagatcaagggtagggaaggatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggct 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10124160 cctaattctagatcaagggtagggaaggatcaagttgtttgcaaagttcaagataagttaaataaagaaccctattcttggcaccggttcgatgatggct 10124259  T
Q  120 attatacttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10124260 attatacttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagca 10124359  T
Q  220 attaccggcttcacacagttttcttgattgcaatgcacacacttcatcaatcttggatacatcaaagtctctg 292  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10124360 attaccggtttcacacagttttcttgattgcaatgcacacacttcatcaatcttggatacatcaaagtctctg 10124432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 47 - 251
Target Start/End: Original strand, 28649788 - 28649992
Alignment:
Q  47 gatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattctt-ggcaccggttcgatgatggctattatacttgcaaaaatatttcaatt 145  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| ||||| || ||||  | ||| ||||||| | ||||||||||||||||| |||||||    
T  28649788 gatcaagttatttgcatagttcaagataagttaaataaagaactctattttttggcattg-ttctatgatggttgttatacttgcaaaaatacttcaatt 28649886  T
Q  146 gttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttg 245  Q
    ||| ||| || |||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||  ||||||  |    
T  28649887 gtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatattctttttcttctcagcaattatcggcttcacattgttttcacg 28649986  T
Q  246 attgca 251  Q
    ||||||    
T  28649987 attgca 28649992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 43 - 254
Target Start/End: Complemental strand, 21393273 - 21393062
Alignment:
Q  43 gaaggatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttca 142  Q
    |||||||||||||||| ||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||||  | || |||||||||||||| ||||    
T  21393273 gaaggatcaagttgttggcataattcaaaataagtcaaataaagaactctattcttggcaccggttcgatgatgattgttgtacttgcaaaaatacttca 21393174  T
Q  143 attgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttc 242  Q
    ||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  21393173 attgttcaagcttgcaacaaccgagcatttgtcccagcaatagaaacaaccaattgatattctttttcttctcggcaattaccggtttcacactgttttc 21393074  T
Q  243 ttgattgcaatg 254  Q
    ||||||||||||    
T  21393073 ttgattgcaatg 21393062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 292
Target Start/End: Complemental strand, 21422587 - 21422334
Alignment:
Q  43 gaaggatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttca 142  Q
    |||||||||||||| | ||| | ||||| ||||||||||||||||||  ||||||||||||| || ||||||||  | ||||||||||||||||| ||||    
T  21422587 gaaggatcaagttggtggcataattcaaaataagtcaaataaagaactgtattcttggcacctgtgcgatgatgattgttatacttgcaaaaatacttca 21422488  T
Q  143 attgttcaagcttacaacaaccaagcatttgtcct----agcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagt 238  Q
    | ||||||||||| ||||||||||||||||||||     ||||||||||||||||||| ||||||||||||||||||||||||||  ||||| |||| ||    
T  21422487 aatgttcaagcttgcaacaaccaagcatttgtcccggccagcaacagaaacaaccaatagatattctttttcttctcagcaattattggcttgacactgt 21422388  T
Q  239 tttcttgattgcaatgcacacacttcatcaatcttggatacatcaaagtctctg 292  Q
    |||||||||||||||||||||| ||   |||| |||||| ||||||| ||||||    
T  21422387 tttcttgattgcaatgcacacatttaggcaattttggattcatcaaattctctg 21422334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 1975176 - 1975279
Alignment:
Q  157 caacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttgattgcaatgca 256  Q
    |||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||| ||||||||| || |||||||  |||| |||||||||||| |    
T  1975176 caacaaccaagcatttgtcccatcaacataaacaaccaattgatactctttttcttcttagcaattacaggtttcacactatttttttgattgcaatgta 1975275  T
Q  257 caca 260  Q
    ||||    
T  1975276 caca 1975279  T

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Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 34 - 285
Target Start/End: Original strand, 25044298 - 25044549
Alignment:
Q  34 aagggtagggaaggatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaa 133  Q
    |||||||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||| ||||||| | |||||||||||||    
T  25044298 aagggtacagaaggatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaa 25044397  T
Q  134 aatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcac 233  Q
    |||| |||||||||| ||| || |||||||| ||||||||||| | || |||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  25044398 aatacttcaattgtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttcttctcggcaattatcggcttcac 25044497  T
Q  234 acagttttcttgattgcaatgcacacacttcatcaatcttggatacatcaaa 285  Q
    || ||||||||  ||||||||||||||  |   ||||||||||| |||||||    
T  25044498 actgttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaa 25044549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 56 - 285
Target Start/End: Original strand, 25040582 - 25040811
Alignment:
Q  56 gtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaattgttcaagctt 155  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||| | ||||||||| |  || |||||||||||||| |||||||||||||||||    
T  25040582 gtttgcatagttcaaaataagtcaaataaagaactctattcttggcaccagctcgatgatgaccgttgtacttgcaaaaatacttcaattgttcaagctt 25040681  T
Q  156 acaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttgattgcaatgc 255  Q
     ||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||  ||||||||||||||||||    
T  25040682 gcaacaaccaattatttgtcccagcaacagaaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgc 25040781  T
Q  256 acacacttcatcaatcttggatacatcaaa 285  Q
    | ||| ||   |||| |||||| |||||||    
T  25040782 aaacattttggcaattttggattcatcaaa 25040811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 47 - 260
Target Start/End: Complemental strand, 54479573 - 54479360
Alignment:
Q  47 gatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaattg 146  Q
    |||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| | |  |||||   |  | |  ||||| ||||| ||||  ||    
T  54479573 gatcaagttgtttgcagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctg 54479474  T
Q  147 ttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttga 246  Q
    || | || | || || ||||||||||||||||  |||||||||| ||| |||||| ||  |||||| |||||||||||||||||||||| ||||| ||||    
T  54479473 tttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttga 54479374  T
Q  247 ttgcaatgcacaca 260  Q
    || || ||||||||    
T  54479373 ttacagtgcacaca 54479360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 285
Target Start/End: Original strand, 25042759 - 25042958
Alignment:
Q  79 aaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtccta 178  Q
    ||||| ||||||||||| ||||||| ||| ||||||||| |     ||||| ||| |||||||| | |||||||||| || || |||||||||||||| |    
T  25042759 aaatatagaaccctatttttggcactggtacgatgatggttg----acttgaaaatatatttcagtggttcaagcttgcagcagccaagcatttgtccca 25042854  T
Q  179 gcaacagaaacaaccaattgatatt--ctttttcttctcagcaattaccggcttcacacagttttcttgattgcaatgcacacacttcatcaatcttgga 276  Q
     |||||||| || | | ||||||||  |||||||||||  |||| |||| | |||||||   | ||| |||   ||||||||||||||| ||||||||||    
T  25042855 acaacagaagcatctagttgatattatctttttcttcttggcaagtaccagtttcacac---tatctcgata--aatgcacacacttcagcaatcttgga 25042949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 79 - 285
Target Start/End: Original strand, 24690534 - 24690740
Alignment:
Q  79 aaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtccta 178  Q
    ||||||| || |||||| |||||||  |||||||||||  | |||||||||||||||||  | |||| |||| |||| |||||||||| ||||||||  |    
T  24690534 aaataaaaaaacctatttttggcacttgttcgatgatgattgttatacttgcaaaaataccttaattattcatgcttgcaacaaccaatcatttgtctca 24690633  T
Q  179 gcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttgattgcaatgcacacacttcatcaatcttggata 278  Q
    | ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||  | |||||||||||||||| ||||| ||   |||||||||||     
T  24690634 gaaacagaaacaatcaattgatattctttttcttctcaataattaccggcttcacattggtttcttgattgcaatgtacacattttgacaatcttggatt 24690733  T
Q  279 catcaaa 285  Q
    |||||||    
T  24690734 catcaaa 24690740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 39600467 - 39600540
Alignment:
Q  127 ttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgat 200  Q
    ||||| ||||||||||| |||| |||||| ||||| |||| ||| || || | ||||| |||||||||||||||    
T  39600467 ttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgat 39600540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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