View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10585_low_8 (Length: 253)
Name: NF10585_low_8
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10585_low_8 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 34926648 - 34926406
Alignment:
| Q |
11 |
aagcagagaaacaagcattattaaatatgacaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaataccttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926648 |
aagcagagaaacaagcattattaaatatgacaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaataccttt |
34926549 |
T |
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| Q |
111 |
ggcatcctttagtaacatacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926548 |
ggcatcctttagtaacatacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggt |
34926449 |
T |
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| Q |
211 |
ttgaaaggctcagatccaaagttgattgaaattgcttattcat |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926448 |
ttgaaaggctcagatccaaagttgattgaaattgcttattcat |
34926406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 34931555 - 34931313
Alignment:
| Q |
11 |
aagcagagaaacaagcattattaaatatgacaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaataccttt |
110 |
Q |
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||||||| ||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||| | |
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| T |
34931555 |
aagcagaaaaacaagcattattaaacatgacaagatggtcacaaaatgggtttgagaaactgatgaaaagaaataaacttgatgctgtagtaacacctat |
34931456 |
T |
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| Q |
111 |
ggcatcctttagtaacatacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggt |
210 |
Q |
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| T |
34931455 |
ttggtcctttagccatatacttgctattggaggttatcctggactgagtgttccagcaggatatgaaaagggtcagccatttggaattttctttggaggt |
34931356 |
T |
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| Q |
211 |
ttgaaaggctcagatccaaagttgattgaaattgcttattcat |
253 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
34931355 |
ttgaaagggtcagagccaaagttgattgaaattgcttattcat |
34931313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 34896460 - 34896220
Alignment:
| Q |
11 |
aagcagagaaacaagcattattaaatatgacaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaataccttt |
110 |
Q |
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||||||| ||||||||||||||||| |||||||||| |||| | ||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||| |
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| T |
34896460 |
aagcagaaaaacaagcattattaaacatgacaagatggtcagaaaatgggtttgagaaactgatgaaaataaataaacttgatgctgtagtaacaccttt |
34896361 |
T |
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| Q |
111 |
ggcatcctttagtaacatacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggt |
210 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| ||| |
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| T |
34896360 |
ttggtcctttagtcacatacttgctattggaggttatcctggagtgagtgttccagcaggatatgaaaagggtgtgccatttggaatttgctttggtggt |
34896261 |
T |
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| Q |
211 |
ttgaaaggctcagatccaaagttgattgaaattgcttattc |
251 |
Q |
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|| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
34896260 |
ttaaaagggtcagagccaaagttgattgaaattgcttattc |
34896220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 34919899 - 34919663
Alignment:
| Q |
17 |
agaaacaagcattattaaatatgacaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaatacctttggcatc |
116 |
Q |
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||||| ||||||||||||| |||||||||| |||| | ||||||||||| |||||||| |||| |||| |||||||||||||||||| ||||| |||| |
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| T |
34919899 |
agaaagaagcattattaaacatgacaagatggtcagaaaatgggtttgagaaactgataaaaacaaatgaacttgatgctgtggtaacgcctttttcatc |
34919800 |
T |
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| Q |
117 |
ctttagtaacatacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggtttgaaa |
216 |
Q |
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|||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
34919799 |
ctttagtagcatacttgctattggaggttatcctggaatcattgttccagcaggatatgaaaagggtaagccatttggaatttgttttggaggtttgaaa |
34919700 |
T |
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| Q |
217 |
ggctcagatccaaagttgattgaaattgcttattcat |
253 |
Q |
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|||||||| || ||||||||||||||||||||||||| |
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| T |
34919699 |
ggctcagagccgaagttgattgaaattgcttattcat |
34919663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 70 - 253
Target Start/End: Complemental strand, 34914153 - 34913970
Alignment:
| Q |
70 |
ctgatgaaaagaaataaacttgatgctgtggtaatacctttggcatcctttagtaacatacttgccattggaggttatcctggagtgattgttccagcag |
169 |
Q |
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|||||||||| ||||||||||||| ||||||||| |||||| ||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
34914153 |
ctgatgaaaataaataaacttgatcctgtggtaacacctttttcattctttagtagcatacttgctattggaggttatcttggagtgattgttccagcag |
34914054 |
T |
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| Q |
170 |
gatatgaaaaggatcagccatttggaatttgctttggaggtttgaaaggctcagatccaaagttgattgaaattgcttattcat |
253 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
34914053 |
gatatgaaaaaggtcagccatttggaatttgctttggaggtttgaaagggtcagagccaaagttgattgagattgcttattcat |
34913970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 34909950 - 34909708
Alignment:
| Q |
11 |
aagcagagaaacaagcattattaaatatgacaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaataccttt |
110 |
Q |
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||||||| ||| |||||||||| |||||| |||||| |||| | ||||||||||| ||||||||||||| |||||||||||||||||| | | |||||| |
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| T |
34909950 |
aagcagaaaaagaagcattattgaatatgtcaagatggtcagaaaatgggtttgagaaactgatgaaaataaataaacttgatgctgtaatgacaccttt |
34909851 |
T |
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| Q |
111 |
ggcatcctttagtaacatacttgccattggaggttatcctggagtgattgttccagcaggatatgaaaaggatcagccatttggaatttgctttggaggt |
210 |
Q |
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|||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||| ||| |
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| T |
34909850 |
ttggtcctttagccacatactggctattggaggttatcctggagtgagtgttccagcaggatatgaaaagggtgtaccatttggaatttgttttggtggt |
34909751 |
T |
|
| Q |
211 |
ttgaaaggctcagatccaaagttgattgaaattgcttattcat |
253 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
34909750 |
ttgaaagggtcagagccaaagttgattgaaattgcttattcat |
34909708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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