View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10585_low_9 (Length: 251)

Name: NF10585_low_9
Description: NF10585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10585_low_9
NF10585_low_9
[»] chr4 (2 HSPs)
chr4 (1-247)||(46168228-46168474)
chr4 (1-50)||(19080476-19080525)
[»] chr2 (3 HSPs)
chr2 (49-247)||(12725330-12725528)
chr2 (1-50)||(11007322-11007371)
chr2 (1-32)||(12725526-12725557)
[»] chr6 (2 HSPs)
chr6 (28-153)||(8496384-8496510)
chr6 (170-240)||(8496320-8496389)
[»] chr5 (2 HSPs)
chr5 (1-50)||(6476703-6476752)
chr5 (1-50)||(10554637-10554686)
[»] chr7 (1 HSPs)
chr7 (1-38)||(18977099-18977136)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 46168228 - 46168474
Alignment:
Q  1 ttaaatggtctccataaatttccaactttcttgctgcacccaatcacgctttgtttcaattttgtgcctaaaaaaccaggaatgaaatcagccaccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |    
T  46168228 ttaaatggtctccataaatttccaactttcttgctgcacccgatcacgctttgtttcaatttagtgcctaaaaaacctggaatgaaatcagccaccactt 46168327  T
Q  101 gtatgtacagccaccgtttattcaagagtttcttttggccgatctcaaattatctaactatacaccaccaattattcacggccagtaaagtaattggctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  46168328 gtatgtacagccaccgtttattcaagagtttcttttggccgatctcaaattatctaactatacaccaccaattattcacagcccgtaaagtaattggctt 46168427  T
Q  201 gaaactcaatttgaatgaaatcatctcagtgctcctctctgctcctc 247  Q
    ||||||||||||||||||||||||||| || ||||||| || |||||    
T  46168428 gaaactcaatttgaatgaaatcatctccgttctcctctttgttcctc 46168474  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19080476 - 19080525
Alignment:
Q  1 ttaaatggtctccataaatttccaactttcttgctgcacccaatcacgct 50  Q
    ||||||||||||||||||||||||||||||||| || ||  |||||||||    
T  19080476 ttaaatggtctccataaatttccaactttcttgatgtacggaatcacgct 19080525  T

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Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 49 - 247
Target Start/End: Complemental strand, 12725528 - 12725330
Alignment:
Q  49 ctttgtttcaattttgtgcctaaaaaaccaggaatgaaatcagccaccacctgtatgtacagccaccgtttattcaagagtttcttttggccgatctcaa 148  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  12725528 ctttgtttcaattttgtgcttaaaaaaccaggaatgaaatcagccaccatttgtatgtacaaccaccgtttattcaagagtttcttttggcagatctcaa 12725429  T
Q  149 attatctaactatacaccaccaattattcacggccagtaaagtaattggcttgaaactcaatttgaatgaaatcatctcagtgctcctctctgctcctc 247  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  12725428 attatctaactatacaccaccaattattcagagccagtaaagtaattggcttgaaactcaatttgaatgaaatcatctcagtgctcctctttgttcctc 12725330  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11007322 - 11007371
Alignment:
Q  1 ttaaatggtctccataaatttccaactttcttgctgcacccaatcacgct 50  Q
    |||||||||||||| |||||| ||||||||||| |||||| |||||||||    
T  11007322 ttaaatggtctccacaaattttcaactttcttgatgcaccgaatcacgct 11007371  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 12725557 - 12725526
Alignment:
Q  1 ttaaatggtctccataaatttccaactttctt 32  Q
    ||||||||||||||||||||||||||||||||    
T  12725557 ttaaatggtctccataaatttccaactttctt 12725526  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 8496510 - 8496384
Alignment:
Q  28 ttcttgctgcaccc-aatcacgctttgtttcaattttgtgcctaaaaaaccaggaatgaaatcagccaccacctgtatgtacagccaccgtttattcaag 126  Q
    |||||||||||||| |||||| || ||||||||||| |||||||||||||||   |||||||||||||| || |||||||||| | ||||||||||||||    
T  8496510 ttcttgctgcaccccaatcacactctgtttcaatttagtgcctaaaaaaccaacgatgaaatcagccactacttgtatgtacaacaaccgtttattcaag 8496411  T
Q  127 agtttcttttggccgatctcaaattat 153  Q
    | |||||||||||||||||||||||||    
T  8496410 aatttcttttggccgatctcaaattat 8496384  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 8496389 - 8496320
Alignment:
Q  170 aattattcacggccagtaaagtaattggcttgaaactcaatttgaatgaaatcatctcagtgctcctctct 240  Q
    |||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  8496389 aattattcacagccagtaaagtaat-ggcttcaaactcaatctgaatgaaatcatctcagtgctcctctct 8496320  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6476752 - 6476703
Alignment:
Q  1 ttaaatggtctccataaatttccaactttcttgctgcacccaatcacgct 50  Q
    ||||||||||||||||||||||||||||||||| || ||  |||||||||    
T  6476752 ttaaatggtctccataaatttccaactttcttgatgtacggaatcacgct 6476703  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10554637 - 10554686
Alignment:
Q  1 ttaaatggtctccataaatttccaactttcttgctgcacccaatcacgct 50  Q
    ||||||||| ||||||||||||||||||||||| || ||  |||||||||    
T  10554637 ttaaatggtttccataaatttccaactttcttgatgtacggaatcacgct 10554686  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18977099 - 18977136
Alignment:
Q  1 ttaaatggtctccataaatttccaactttcttgctgca 38  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  18977099 ttaaatggtctccataaattttcaactttcttgatgca 18977136  T

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