View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10586_high_3 (Length: 366)
Name: NF10586_high_3
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_high_3 |
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| [»] scaffold0096 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 10624838 - 10624497
Alignment:
| Q |
19 |
cttggtgcattattccttctcattggttgtgctggcttctctgcattttacattttacaagtaagttcacatatacatattagaaccacaaacttatact |
118 |
Q |
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| T |
10624838 |
cttggtgcattattccttctcattggttgtgctggcttctctgcattttacattttacaagtaagttcacatatacatattagaaccacaaacttatact |
10624739 |
T |
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| Q |
119 |
ttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgacccgactaaacaatttctaatcaattccaggctataacat |
218 |
Q |
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| T |
10624738 |
ttaaccaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgacccgactaaacaatttctaatcaattgcaggctataacat |
10624639 |
T |
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| Q |
219 |
tgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggagcgcaaacatcc |
318 |
Q |
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| T |
10624638 |
tgagaaagtatccagcagagatgtcactggccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggagcgcaaacatcc |
10624539 |
T |
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| Q |
319 |
tgaagcctggtctttgggcatggactctagactctctgcttc |
360 |
Q |
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| T |
10624538 |
tgaagcctggtctttgggcctggactctagactctttgcttc |
10624497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 115 - 358
Target Start/End: Original strand, 21095186 - 21095429
Alignment:
| Q |
115 |
tactttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgaccc-gactaaacaatttctaatcaattccaggctat |
213 |
Q |
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| T |
21095186 |
tacttttaacaaatgatgtctattgtcgttaaagtttcgaacaattttcaaatacag-tttcgaccctgaataaacaatctcatatcaattgcaggccac |
21095284 |
T |
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| Q |
214 |
aacattgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggagcgcaaa |
313 |
Q |
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| T |
21095285 |
atcattgagaaagtatccagcaaatatgtcattagccacatgggtttgctttgttggtgcacttcaaagctttgttgtaactattttaatggagcgcaaa |
21095384 |
T |
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| Q |
314 |
catcctgaagcctggtctttgggcatggactctagactctctgct |
358 |
Q |
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| T |
21095385 |
caccctgaagcttggtctttgggcctgaactctagactctttgct |
21095429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 109 - 358
Target Start/End: Complemental strand, 45560 - 45311
Alignment:
| Q |
109 |
aacttatactttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgaccc-gactaaacaatttctaatcaattcca |
207 |
Q |
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| T |
45560 |
aacttctacttttaacaaatgatgtctattgttgttaaagtttcgaacaattttcaaatacag-tttcgaccctgaataaacaatctcttatcaattgca |
45462 |
T |
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| Q |
208 |
ggctataacattgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggag |
307 |
Q |
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| T |
45461 |
ggccacatcattgagaaagtatccagcaaatatgtcattagccacatgggtttgctttgttggtgcacttcaaagcactgttgtaactattgtaatggag |
45362 |
T |
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| Q |
308 |
cgcaaacatcctgaagcctggtctttgggcatggactctagactctctgct |
358 |
Q |
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| T |
45361 |
cgcaaacaccctgaaacttggtctttgggcctggactctagactctttgct |
45311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 46020 - 45964
Alignment:
| Q |
40 |
attggttgtgctggcttctctgcattttacattttacaagtaagttcacatatacata |
97 |
Q |
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| T |
46020 |
attggttgtgttggaatctctgccttctacattttacaagtaag-tcacatatacata |
45964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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