View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10586_high_6 (Length: 250)
Name: NF10586_high_6
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 41747673 - 41747450
Alignment:
| Q |
14 |
agagggacaaccgaacatgttttgcttaagcattaaacgccaatcttcgatgttagtcccacggcaacaatccactttaggaaaagctctcttttcaagc |
113 |
Q |
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| T |
41747673 |
agagggacaactgaacatgttttgcttaagcattaaacgccaatcttcgatgttagtcccacggcaacaatccactttaggaaaagctctcttttcaagc |
41747574 |
T |
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| Q |
114 |
atttctataatcttcatagttttaccaagaacataaactgcttctctaacactatcctccctctcttcaatagcacaatgcaaacccttaacagatataa |
213 |
Q |
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| T |
41747573 |
atttctataatcttcatagttttaccaagaacataaactgcttctctaacactatcctccctctcttcaatagcacaatgcaaacccttaacagatataa |
41747474 |
T |
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| Q |
214 |
catgaggcaagttagttaaacatg |
237 |
Q |
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|||||||||||||||||||||||| |
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| T |
41747473 |
catgaggcaagttagttaaacatg |
41747450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 41738084 - 41738307
Alignment:
| Q |
14 |
agagggacaaccgaacatgttttgcttaagcattaaacgccaatcttcgatgttagtcccacggcaacaatccactttaggaaaagctctcttttcaagc |
113 |
Q |
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||||| ||||| |||| | || |||||| ||||||||| ||||||||| || |||||||||||||| ||||||| ||||||| ||||| ||||||||| |
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| T |
41738084 |
agaggaacaacagaacctcttctgcttatgcattaaacaccaatcttcaatattagtcccacggcagaaatccaccctaggaaatgctctattttcaagc |
41738183 |
T |
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| Q |
114 |
atttctataatcttcatagttttaccaagaacataaactgcttctctaacactatcctccctctcttcaatagcacaatgcaaacccttaacagatataa |
213 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || || ||||| |||||||||||||| |
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| T |
41738184 |
atttctataatcttctttgttttaccaagaacataaactgcttgtctaacactatcctctctctcttcaatgccagtattcaaacacttaacagatataa |
41738283 |
T |
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| Q |
214 |
catgaggcaagttagttaaacatg |
237 |
Q |
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||| ||| |||||||||||||||| |
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| T |
41738284 |
cataaggtaagttagttaaacatg |
41738307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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