View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10586_low_11 (Length: 267)
Name: NF10586_low_11
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 25032464 - 25032227
Alignment:
| Q |
13 |
atgaaggtttagcaattgtcatcggaaccacccaaactcgccatggcaccgccgaccaccgacagattgagccctctaccggacccactcctcatccata |
112 |
Q |
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| T |
25032464 |
atgaaggtttagcaattgtcatcggaaccacccaaactcgccatggcaccgccgaccaccgacagattaagccctctaccggacccactcctcttccata |
25032365 |
T |
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| Q |
113 |
tactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctggcagaatctacaagccttcgaattctc |
212 |
Q |
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| T |
25032364 |
tactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctggcagaatctacaagccttcgaattctc |
25032265 |
T |
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| Q |
213 |
cgacgactcacacgaagacggcaactggccaataatgt |
250 |
Q |
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| T |
25032264 |
cgacgactcatacgaagacggcaactggccaataatgt |
25032227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 25922774 - 25922842
Alignment:
| Q |
118 |
tcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctgg |
186 |
Q |
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| T |
25922774 |
tcatttctcccaacgagaacctctgtggccacaatgaatcttgtctctcgcaggtggcgcaatctctgg |
25922842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 24523217 - 24523267
Alignment:
| Q |
109 |
catatactctcattcctcccaaccagaacctccgtggcaacaacgagtctc |
159 |
Q |
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| T |
24523217 |
catatactctccttcctaccaacaagaacctccgtggcaacgatgagtctc |
24523267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 30076801 - 30076879
Alignment:
| Q |
108 |
ccatatactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctgg |
186 |
Q |
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||||||||| || ||||||||||| |||||||||| ||||| | || |||| |||||| |||||||||| | |||||| |
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| T |
30076801 |
ccatatactatccttcctcccaactcgaacctccgtcgcaaccatgactctcgtctctcacaggtggcgacacctctgg |
30076879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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