View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10586_low_15 (Length: 236)

Name: NF10586_low_15
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10586_low_15
NF10586_low_15
[»] chr4 (6 HSPs)
chr4 (105-220)||(27625175-27625290)
chr4 (107-220)||(44558118-44558231)
chr4 (105-220)||(2827783-2827897)
chr4 (17-53)||(27625342-27625378)
chr4 (17-53)||(44558028-44558064)
chr4 (163-220)||(35996448-35996505)
[»] chr8 (5 HSPs)
chr8 (105-221)||(32822745-32822861)
chr8 (105-220)||(31821787-31821902)
chr8 (107-220)||(33750017-33750129)
chr8 (17-53)||(32822914-32822950)
chr8 (118-220)||(37525665-37525766)
[»] chr1 (9 HSPs)
chr1 (105-220)||(6575551-6575666)
chr1 (105-220)||(35479596-35479711)
chr1 (108-221)||(33682857-33682969)
chr1 (105-220)||(18183575-18183689)
chr1 (105-220)||(31802012-31802126)
chr1 (105-220)||(46638438-46638552)
chr1 (105-220)||(36895142-36895256)
chr1 (17-53)||(6575718-6575754)
chr1 (167-220)||(45380669-45380722)
[»] chr7 (9 HSPs)
chr7 (127-220)||(46812229-46812322)
chr7 (108-186)||(36755366-36755444)
chr7 (108-186)||(36761163-36761241)
chr7 (107-220)||(46996335-46996447)
chr7 (17-53)||(36755500-36755536)
chr7 (17-53)||(36761297-36761333)
chr7 (107-220)||(23954190-23954302)
chr7 (17-53)||(46812140-46812176)
chr7 (108-136)||(33038435-33038463)
[»] chr5 (6 HSPs)
chr5 (105-220)||(33256778-33256892)
chr5 (105-220)||(35395709-35395823)
chr5 (105-220)||(18728233-18728347)
chr5 (111-220)||(38177723-38177831)
chr5 (111-220)||(38204947-38205055)
chr5 (167-220)||(35292073-35292126)
[»] chr2 (4 HSPs)
chr2 (105-220)||(29909293-29909407)
chr2 (108-220)||(91981-92092)
chr2 (105-214)||(42001999-42002107)
chr2 (167-220)||(15432710-15432763)
[»] chr6 (2 HSPs)
chr6 (134-220)||(30640989-30641074)
chr6 (17-49)||(30640889-30640921)
[»] chr3 (7 HSPs)
chr3 (105-220)||(45898008-45898122)
chr3 (105-187)||(31887077-31887158)
chr3 (105-220)||(18429902-18430016)
chr3 (105-220)||(33112811-33112925)
chr3 (105-220)||(33852307-33852420)
chr3 (163-220)||(23888461-23888518)
chr3 (173-221)||(24382583-24382631)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 27625290 - 27625175
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcataatcatcaga 204  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  27625290 agggtgaatacgaacacataaacttgacaaacaacaggaaagacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcagaatcatcgga 27625191  T
Q  205 gatgatgatgattttg 220  Q
    ||||||||||||||||    
T  27625190 gatgatgatgattttg 27625175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 44558118 - 44558231
Alignment:
Q  107 ggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcataatcatcagaga 206  Q
    |||||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||    
T  44558118 ggtgaaaacgaacacataaacttgataaacaacagaaaagacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcagaatcatcgaaga 44558217  T
Q  207 tgatgatgattttg 220  Q
    ||||||||||||||    
T  44558218 tgatgatgattttg 44558231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 2827897 - 2827783
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||||| ||||||   |||||||||   ||  ||||||||||||| |||||||||||| |||| ||||  |     
T  2827897 agggtgaatacgaacacaaaaacttgataaacaacaggaaaggtgttaccttt---aatcacaaccgaacacacaaacttcaaaaatgtcagaatcgccg 2827801  T
Q  203 gagatgatgatgattttg 220  Q
    ||||||||||||||||||    
T  2827800 gagatgatgatgattttg 2827783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 27625378 - 27625342
Alignment:
Q  17 agaacaaggaaagcatcaacgatcacataaatgtggt 53  Q
    ||||||||||||||||||| |||||||||||||||||    
T  27625378 agaacaaggaaagcatcaaggatcacataaatgtggt 27625342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 44558028 - 44558064
Alignment:
Q  17 agaacaaggaaagcatcaacgatcacataaatgtggt 53  Q
    |||||||||||||||||||| ||||||||||||||||    
T  44558028 agaacaaggaaagcatcaacaatcacataaatgtggt 44558064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 35996505 - 35996448
Alignment:
Q  163 acaaccgaacacagaaacttcaaaaacgtcataatcatcagagatgatgatgattttg 220  Q
    |||| ||||||| | |||||||||||||||| ||||  | ||||||||||||||||||    
T  35996505 acaatcgaacacgggaacttcaaaaacgtcagaatcggcggagatgatgatgattttg 35996448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 32822861 - 32822745
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcataatcatcaga 204  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||    
T  32822861 agggtgaatacggacacataaacttgataaacaataggaaaagcgttacctttttgaaacaaccgaatacagaaacttcaaaaacgtcagaatcgtcgga 32822762  T
Q  205 gatgatgatgattttga 221  Q
    |||||||||||||||||    
T  32822761 gatgatgatgattttga 32822745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 31821902 - 31821787
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcataatcatcaga 204  Q
    |||||||||||||||||| ||||||||||||||| ||||||  ||||  | |||    ||||||||||||| |||||||||||| |||| ||||  | ||    
T  31821902 agggtgaatacgaacacaaaaacttgataaacaacaggaaaggcgtttacctttaatcacaaccgaacacacaaacttcaaaaatgtcagaatcgccgga 31821803  T
Q  205 gatgatgatgattttg 220  Q
    ||||||||||||||||    
T  31821802 gatgatgatgattttg 31821787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 33750017 - 33750129
Alignment:
Q  107 ggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaa--ccgaacacagaaacttcaaaaacgtcataatcatcaga 204  Q
    ||||||||| |||||| ||||||||||||||| ||||||   |||||||||   || ||   | ||||||| |||||||||||| |||| ||||||| ||    
T  33750017 ggtgaatacaaacacaaaaacttgataaacaacaggaaaggtgttaccttt---aatcagagcagaacacacaaacttcaaaaatgtcagaatcatcgga 33750113  T
Q  205 gatgatgatgattttg 220  Q
    ||||||||||||||||    
T  33750114 gatgatgatgattttg 33750129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 32822950 - 32822914
Alignment:
Q  17 agaacaaggaaagcatcaacgatcacataaatgtggt 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  32822950 agaacaaggaaagcatcaacgatcacataaatgtggt 32822914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 37525665 - 37525766
Alignment:
Q  118 acacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatcagagatgatgatga 215  Q
    ||||| ||||||||||||| ||||||||   |||||||||   ||  ||||||||||||| |||||||| | |||| | ||||  |||||||||||||||    
T  37525665 acacagaaacttgataaactataggaaatgtgttaccttt---aaccacaaccgaacacaaaaacttcacagacgtgagaatcgccagagatgatgatga 37525761  T
Q  216 ttttg 220  Q
    |||||    
T  37525762 ttttg 37525766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 6575666 - 6575551
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcataatcatcaga 204  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||    
T  6575666 agggtgaatacgaacacataaacttgataaacaacaggaaaagcgttacctttttaaaacaaccgaacacataaacttcaaaaacgtcagaatcatcgga 6575567  T
Q  205 gatgatgatgattttg 220  Q
    ||||||||||||||||    
T  6575566 gatgatgatgattttg 6575551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 35479596 - 35479711
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcataatcatcaga 204  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||  |    
T  35479596 agggtgaatacgaacacataaacttgataaacaacaggaaaggcgttacctttttgaaacaaccgaatacagaaacttcaaaaacatcagaatcgtcgaa 35479695  T
Q  205 gatgatgatgattttg 220  Q
    ||||||||||||||||    
T  35479696 gatgatgatgattttg 35479711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 33682857 - 33682969
Alignment:
Q  108 gtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatcagag 205  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||||   ||  |||  |||||||||||||||||||||||||||||||  | |||    
T  33682857 gtgaatacgaacacagaaacttgataaacaataggaaaggcgttaccttt---aatcacagtcgaacacagaaacttcaaaaacgtcataatcgccggag 33682953  T
Q  206 atgatgatgattttga 221  Q
    ||||||||||||||||    
T  33682954 atgatgatgattttga 33682969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 18183575 - 18183689
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||| | ||||||   |||||||||   ||  ||| ||||||||||||||||||||||||| | ||||  |     
T  18183575 agggtgaatacgaacacagaaacttgataaactagaggaaaggtgttaccttt---aaccacagccgaacacagaaacttcaaaaacgtgagaatcgccg 18183671  T
Q  203 gagatgatgatgattttg 220  Q
    ||||||||||||||||||    
T  18183672 gagatgatgatgattttg 18183689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 31802126 - 31802012
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||||| ||||||   |||||||||   ||  ||| ||||||||| |||||||||||| |||| ||||  |     
T  31802126 agggtgaatacgaacacaaaaacttgataaacaacaggaaaggtgttaccttt---aatcacagccgaacacacaaacttcaaaaatgtcagaatcgccg 31802030  T
Q  203 gagatgatgatgattttg 220  Q
    ||||||||||||||||||    
T  31802029 gagatgatgatgattttg 31802012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 46638438 - 46638552
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||||| ||||||   |||||||||   ||  ||| ||||||||| |||||||||||| |||| |||| ||     
T  46638438 agggtgaatacgaacacaaaaacttgataaacaacaggaaatgtgttaccttt---aatcacagccgaacacacaaacttcaaaaatgtcagaatcgtcg 46638534  T
Q  203 gagatgatgatgattttg 220  Q
     |||||||||||||||||    
T  46638535 aagatgatgatgattttg 46638552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 36895142 - 36895256
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||||| ||||||   | |||||||   ||  ||| ||||||| | |||||||||||  |||| |||| ||     
T  36895142 agggtgaatacgaacacaaaaacttgataaacaacaggaaaggtgctaccttt---aatcacagccgaacaaacaaacttcaaaactgtcagaatcgtcg 36895238  T
Q  203 gagatgatgatgattttg 220  Q
    ||||||||||||||||||    
T  36895239 gagatgatgatgattttg 36895256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 6575754 - 6575718
Alignment:
Q  17 agaacaaggaaagcatcaacgatcacataaatgtggt 53  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6575754 agaacaaggaaagcatcaacgatcacataattgtggt 6575718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 45380669 - 45380722
Alignment:
Q  167 ccgaacacagaaacttcaaaaacgtcataatcatcagagatgatgatgattttg 220  Q
    ||||||||| ||||||||||||||||| ||||  | | ||||||||||||||||    
T  45380669 ccgaacacataaacttcaaaaacgtcagaatcgccggtgatgatgatgattttg 45380722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 46812229 - 46812322
Alignment:
Q  127 cttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcataatcatcagagatgatgatgattttg 220  Q
    |||||||||||| ||||||  | |||||||||| ||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||||||    
T  46812229 cttgataaacaacaggaaaggcattaccttttttaaacagccgaacacagaaacttcaaaaacgtcagaatcgtcggagatgatgatgattttg 46812322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 36755444 - 36755366
Alignment:
Q  108 gtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaa 186  Q
    |||||||||||||||| |||||||||||||| ||||||   ||||||||||||||||||| ||||||||||||||||||    
T  36755444 gtgaatacgaacacatcaacttgataaacaacaggaaaggtgttacctttttgaaacaactgaacacagaaacttcaaa 36755366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 36761241 - 36761163
Alignment:
Q  108 gtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaa 186  Q
    |||||||||||||||| |||||||||||||| ||||||   ||||||||||||||||||| ||||||||||||||||||    
T  36761241 gtgaatacgaacacatcaacttgataaacaacaggaaaggtgttacctttttgaaacaactgaacacagaaacttcaaa 36761163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 46996335 - 46996447
Alignment:
Q  107 ggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatcaga 204  Q
    |||||||||||||||| ||||||||||||||| ||||||   |||||||||   ||  ||| ||||||||| |||||||||||| |||| |||| || ||    
T  46996335 ggtgaatacgaacacaaaaacttgataaacaacaggaaaggtgttaccttt---aatcacagccgaacacacaaacttcaaaaatgtcagaatcgtcgga 46996431  T
Q  205 gatgatgatgattttg 220  Q
    ||||||||||||||||    
T  46996432 gatgatgatgattttg 46996447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 36755536 - 36755500
Alignment:
Q  17 agaacaaggaaagcatcaacgatcacataaatgtggt 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  36755536 agaacaaggaaagcatcaacgatcacataaatgtggt 36755500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 36761333 - 36761297
Alignment:
Q  17 agaacaaggaaagcatcaacgatcacataaatgtggt 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  36761333 agaacaaggaaagcatcaacgatcacataaatgtggt 36761297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 23954302 - 23954190
Alignment:
Q  107 ggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatcaga 204  Q
    |||||||||||||||| ||||||||| ||| ||||||||   | |||||||   ||  ||| |||||| |||||||||||||||||| | ||||   |||    
T  23954302 ggtgaatacgaacacagaaacttgattaactataggaaaggtgctaccttt---aaccacagccgaactcagaaacttcaaaaacgtgagaatcgcgaga 23954206  T
Q  205 gatgatgatgattttg 220  Q
    ||||||||||||||||    
T  23954205 gatgatgatgattttg 23954190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 46812140 - 46812176
Alignment:
Q  17 agaacaaggaaagcatcaacgatcacataaatgtggt 53  Q
    |||||||||||||||| ||||||||||||||||||||    
T  46812140 agaacaaggaaagcattaacgatcacataaatgtggt 46812176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 33038435 - 33038463
Alignment:
Q  108 gtgaatacgaacacataaacttgataaac 136  Q
    |||||||||||||||||||||||||||||    
T  33038435 gtgaatacgaacacataaacttgataaac 33038463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 33256892 - 33256778
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||||| ||||||  ||||||||||   ||  ||||||||||||| |||||||||||| |||| ||||  |     
T  33256892 agggtgaatacgaacacaaaaacttgataaacaacaggaaaggcgttaccttt---aatcacaaccgaacacacaaacttcaaaaatgtcaaaatcgccg 33256796  T
Q  203 gagatgatgatgattttg 220  Q
    ||||||||||||||||||    
T  33256795 gagatgatgatgattttg 33256778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 35395823 - 35395709
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||||| | ||||  ||||||||||   ||  ||| ||||||||| |||||||||||| |||| |||| ||     
T  35395823 agggtgaatacgaacacagaaacttgataaacaacaagaaaggcgttaccttt---aatcacagccgaacacacaaacttcaaaaatgtcagaatcgtcg 35395727  T
Q  203 gagatgatgatgattttg 220  Q
    ||||||||||||||||||    
T  35395726 gagatgatgatgattttg 35395709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 18728233 - 18728347
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    ||||||||||| |||||| ||||||||||||||| ||||||  | ||||||||   ||  ||| ||||||||| |||||||||||| |  | ||||  |     
T  18728233 agggtgaatacaaacacaaaaacttgataaacaacaggaaaggcattaccttt---aatcacagccgaacacacaaacttcaaaaatggtagaatcgccg 18728329  T
Q  203 gagatgatgatgattttg 220  Q
    ||||||||||||||||||    
T  18728330 gagatgatgatgattttg 18728347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 38177723 - 38177831
Alignment:
Q  111 aatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatcagagatg 208  Q
    |||||||||||| ||||||||||||  | ||||||   |||||||||   ||  |||||||||||||  |||||||||||||| | |||||||  |||||    
T  38177723 aatacgaacacagaaacttgataaattagaggaaaggtgttaccttt---aaccacaaccgaacacaacaacttcaaaaacgtgagaatcatcgaagatg 38177819  T
Q  209 atgatgattttg 220  Q
    |||||| |||||    
T  38177820 atgatggttttg 38177831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 38204947 - 38205055
Alignment:
Q  111 aatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatcagagatg 208  Q
    |||||||||||| ||||||||||||  | ||||||   |||||||||   ||  |||||||||||||  |||||||||||||| | |||||||  |||||    
T  38204947 aatacgaacacagaaacttgataaattagaggaaaggtgttaccttt---aaccacaaccgaacacaacaacttcaaaaacgtgagaatcatcgaagatg 38205043  T
Q  209 atgatgattttg 220  Q
    |||||| |||||    
T  38205044 atgatggttttg 38205055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 35292073 - 35292126
Alignment:
Q  167 ccgaacacagaaacttcaaaaacgtcataatcatcagagatgatgatgattttg 220  Q
    |||||||||||||||| |||||||| | ||||  | ||||||||||||||||||    
T  35292073 ccgaacacagaaactttaaaaacgtgagaatcgccggagatgatgatgattttg 35292126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 29909293 - 29909407
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||||| |||||| |||||||||||   ||  |||  |||||||| ||||||||||||||||| ||||| |     
T  29909293 agggtgaatacgaacacagaaacttgataaacaacaggaaagacgttaccttt---aatcacagtcgaacacacaaacttcaaaaacgtcagaatcaccg 29909389  T
Q  203 gagatgatgatgattttg 220  Q
    ||||||||||| ||||||    
T  29909390 gagatgatgataattttg 29909407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 91981 - 92092
Alignment:
Q  108 gtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatcagag 205  Q
    ||||||||||||||| ||||||||||||||| || |||   |||||||||   ||  ||| ||||||||| |||||||||||| |||| |||| || |||    
T  91981 gtgaatacgaacacaaaaacttgataaacaacagaaaaggtgttaccttt---aatcacagccgaacacacaaacttcaaaaatgtcagaatcgtcggag 92077  T
Q  206 atgatgatgattttg 220  Q
    |||||||||||||||    
T  92078 atgatgatgattttg 92092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 42002107 - 42001999
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||   |||||||||||||| ||||||   |||||||||   ||  ||| ||||||||||||||||||||||||| ||||||  |     
T  42002107 agggtgaatacgaacacgggaacttgataaacaacaggaaaggtgttaccttt---aatcacagccgaacacagaaacttcaaaaacgtaataatcgccg 42002011  T
Q  203 gagatgatgatg 214  Q
    ||||||||||||    
T  42002010 gagatgatgatg 42001999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 15432763 - 15432710
Alignment:
Q  167 ccgaacacagaaacttcaaaaacgtcataatcatcagagatgatgatgattttg 220  Q
    ||||||||||||||||||||||||||| ||||  | | ||||||||||||||||    
T  15432763 ccgaacacagaaacttcaaaaacgtcagaatcgccggtgatgatgatgattttg 15432710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 30640989 - 30641074
Alignment:
Q  134 aacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaaaacgtcataatcatcagagatgatgatgattttg 220  Q
    ||||| |||||| ||||||||||||| ||||| | |||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  30640989 aacaacaggaaagacgttaccttttttaaacagcagaacactgaaacttcaaaaacgtcagaatc-tcagagatgatgatgattttg 30641074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 30640889 - 30640921
Alignment:
Q  17 agaacaaggaaagcatcaacgatcacataaatg 49  Q
    |||||||||||||||||||||||||||||||||    
T  30640889 agaacaaggaaagcatcaacgatcacataaatg 30640921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 45898008 - 45898122
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||||| ||||||   |||||||||   ||  ||||||||||||| |||||||||||| |||| ||||  |     
T  45898008 agggtgaatacgaacacaaaaacttgataaacaacaggaaatgtgttaccttt---aatcacaaccgaacacacaaacttcaaaaatgtcagaatcgccg 45898104  T
Q  203 gagatgatgatgattttg 220  Q
    |||||||||||| |||||    
T  45898105 gagatgatgatgtttttg 45898122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 31887077 - 31887158
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaacaaccgaacacagaaacttcaaaa 187  Q
    |||||||||||||||||||||||||||||||| | ||||||   |||||| ||| |  ||| |||||||||||||||||||||    
T  31887077 agggtgaatacgaacacataaacttgataaactagaggaaaggtgttacc-tttagccacagccgaacacagaaacttcaaaa 31887158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 18429902 - 18430016
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||| | || |||||||||||||  ||||   |||||||||   ||  ||| ||||||||||||||||||||||||||| ||||  |     
T  18429902 agggtgaatacgaacatagaatcttgataaacaatttgaaaggtgttaccttt---aatcacagccgaacacagaaacttcaaaaacgtcaaaatcgccg 18429998  T
Q  203 gagatgatgatgattttg 220  Q
    | ||||||||||||||||    
T  18429999 gtgatgatgatgattttg 18430016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 33112811 - 33112925
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaa--acaaccgaacacagaaacttcaaaaacgtcataatcatca 202  Q
    |||||||||||||||||| ||||||||||||| | ||||||   |||||||||   ||  |||  |||||||||||||||||||||||| | ||||        
T  33112811 agggtgaatacgaacacagaaacttgataaactagaggaaaggtgttaccttt---aaccacagtcgaacacagaaacttcaaaaacgtgagaatcgctg 33112907  T
Q  203 gagatgatgatgattttg 220  Q
    ||||||||||||||||||    
T  33112908 gagatgatgatgattttg 33112925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 33852307 - 33852420
Alignment:
Q  105 agggtgaatacgaacacataaacttgataaacaataggaaaaacgttacctttttgaaaca-accgaacacagaaacttcaaaaacgtcataatcatcag 203  Q
    |||||||||||||||||| || ||||||||||||   ||||  ||||||||||   || || | | |||||||||||||||||||||||| ||||  | |    
T  33852307 agggtgaatacgaacacaaaatcttgataaacaacctgaaaggcgttaccttt---aatcacagccaacacagaaacttcaaaaacgtcagaatcgccgg 33852403  T
Q  204 agatgatgatgattttg 220  Q
     ||||||||||||||||    
T  33852404 tgatgatgatgattttg 33852420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 23888461 - 23888518
Alignment:
Q  163 acaaccgaacacagaaacttcaaaaacgtcataatcatcagagatgatgatgattttg 220  Q
    ||||||||||||| |||||| ||||| |||| |||| || ||||||||||||||||||    
T  23888461 acaaccgaacacacaaacttaaaaaatgtcagaatcgtcggagatgatgatgattttg 23888518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 24382583 - 24382631
Alignment:
Q  173 acagaaacttcaaaaacgtcataatcatcagagatgatgatgattttga 221  Q
    |||||||||| |||||||| | |||| || |||||||||||||||||||    
T  24382583 acagaaactttaaaaacgtgagaatcgtcggagatgatgatgattttga 24382631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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