View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10586_low_18 (Length: 234)
Name: NF10586_low_18
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 52550311 - 52550445
Alignment:
| Q |
79 |
ttgaaattctaagtttccaaccttgaaaggttggttgtctgttctgaatgcaatgcccggaacatacttgagccaaactggaaatccactgcatatatca |
178 |
Q |
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| T |
52550311 |
ttgaaattctaagtttccaaccttaaaaggctggttgtctgttctgaatgcaatgcccggaacatacttgagccaaactggaaatccactgcatatatca |
52550410 |
T |
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| Q |
179 |
aatatatataaaaagaagacatttgagtatatagtcta |
216 |
Q |
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| T |
52550411 |
aatatat---aaaagaagacctttgagtatatagtcta |
52550445 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 5229971 - 5229913
Alignment:
| Q |
113 |
ttgtctgttctgaatgcaatgcccggaacatacttgagccaaactggaaatccactgca |
171 |
Q |
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| T |
5229971 |
ttgtctgttctgaaagccatcccaggaacatacttgagccaaacaggaaatcctctgca |
5229913 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 17124905 - 17124827
Alignment:
| Q |
95 |
ccaaccttgaaaggttggttgtctgttctgaatgcaatgcccggaacatacttgagccaaactggaaatccactgcata |
173 |
Q |
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| T |
17124905 |
ccaaccttgaacggctcattgtctgttctgaaagcaacacctggtacatactttagccaaacaggaaatcccctgcata |
17124827 |
T |
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