View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10586_low_19 (Length: 228)

Name: NF10586_low_19
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10586_low_19
NF10586_low_19
[»] chr5 (1 HSPs)
chr5 (1-216)||(35966626-35966844)
[»] chr3 (3 HSPs)
chr3 (1-94)||(1388247-1388340)
chr3 (1-83)||(28437182-28437264)
chr3 (18-83)||(35287300-35287366)
[»] chr8 (2 HSPs)
chr8 (1-83)||(26654467-26654547)
chr8 (21-83)||(20871519-20871581)
[»] chr4 (2 HSPs)
chr4 (4-94)||(17290245-17290334)
chr4 (21-87)||(6856447-6856514)
[»] chr7 (2 HSPs)
chr7 (1-83)||(35552501-35552583)
chr7 (1-83)||(9043697-9043778)
[»] chr2 (1 HSPs)
chr2 (21-94)||(17458705-17458778)
[»] scaffold0221 (1 HSPs)
scaffold0221 (21-94)||(18100-18173)
[»] chr1 (1 HSPs)
chr1 (21-94)||(18917135-18917208)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 35966626 - 35966844
Alignment:
Q  1 tgatatattttgatatctcaaaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactattatatgagtgaaactannn 100  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||       
T  35966626 tgatatattttaatatcttaaaaatggtgagtttttacatggaccaaagtgtggtatttatactactaaatttaccactattacatgagtgaaactattt 35966725  T
Q  101 nnnn---ctcattacaatttacaacaacaagtattaactttttggttaagggcagaaaaaataagttaaattacattcattacaactactaccattcaat 197  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35966726 tttttttctcattacaatttacaacaacaagtattaactttttggttaagggcagaaaaaataagttaaattacattcattacaactactaccattcaat 35966825  T
Q  198 aattatttttatcattaat 216  Q
    |||||||||||||||||||    
T  35966826 aattatttttatcattaat 35966844  T

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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 1388340 - 1388247
Alignment:
Q  1 tgatatattttgatatctcaaaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactattatatgagtgaaa 94  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  1388340 tgatatattttgatatctcaaaaatggtgtgtttttacatgaattaaagtgtggtatttatactactaaatttaccactattacatgagtgaaa 1388247  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28437264 - 28437182
Alignment:
Q  1 tgatatattttgatatctcaaaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactatta 83  Q
    |||||| ||||||| ||||||||||| ||    |||||||| |  |||||||||||||||||||| |||||||||||||||||    
T  28437264 tgatatgttttgatttctcaaaaatgatgcacgtttacatgaatcaaagtgtggtatttatactactaaatttaccactatta 28437182  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 35287300 - 35287366
Alignment:
Q  18 tcaaaaatggtgagtttttacatggactaaa-gtgtggtatttatactattaaatttaccactatta 83  Q
    ||||||||||||  |||||||||| || ||| ||||||||||||||||| |||||||| ||||||||    
T  35287300 tcaaaaatggtgtatttttacatgaaccaaaagtgtggtatttatactactaaatttaacactatta 35287366  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26654547 - 26654467
Alignment:
Q  1 tgatatattttgatatctcaaaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactatta 83  Q
    ||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||    
T  26654547 tgatatattttgatatctcaaaa-tggtgtgtttt-acatgaaccaaagtgtggtatttatactattaaatttaccactatta 26654467  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 20871519 - 20871581
Alignment:
Q  21 aaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactatta 83  Q
    ||||||||  ||||||||||| |  |||||||||||||||||||| |||||||||||||||||    
T  20871519 aaaatggtctgtttttacatgaatcaaagtgtggtatttatactactaaatttaccactatta 20871581  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 17290334 - 17290245
Alignment:
Q  4 tatattttgatatctcaaaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactattatatgagtgaaa 94  Q
    ||||||||||||| |||||| || || ||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  17290334 tatattttgatatttcaaaa-tgatgtgtttttacatgaactaaagtgtggtatttataccactaaatttaccactattacatgagtgaaa 17290245  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 6856514 - 6856447
Alignment:
Q  21 aaaatggtgagtttttacatggactaaag-tgtggtatttatactattaaatttaccactattatatg 87  Q
    |||||||||  |||||||||| || |||  |||| ||||||||||||||||||||||| |||||||||    
T  6856514 aaaatggtgcatttttacatgaacaaaaaatgtgatatttatactattaaatttaccattattatatg 6856447  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35552501 - 35552583
Alignment:
Q  1 tgatatattttgatatctcaaaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactatta 83  Q
    |||||| |||| || ||||||||||| ||  |||||||||| |  |||||||||||||||||||| |||||||||||||||||    
T  35552501 tgatatgtttttatttctcaaaaatgatgtatttttacatgaatcaaagtgtggtatttatactactaaatttaccactatta 35552583  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9043697 - 9043778
Alignment:
Q  1 tgatatattttgatatctcaaaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactatta 83  Q
    |||||| ||||||| |||||||| ||||| || | |||||| |  ||||| |||||||||||||| |||||||||||||||||    
T  9043697 tgatatgttttgatttctcaaaa-tggtgtgtatatacatgaatcaaagtatggtatttatactactaaatttaccactatta 9043778  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 17458705 - 17458778
Alignment:
Q  21 aaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactattatatgagtgaaa 94  Q
    ||||||||| ||||||||||| |  |||||||| |||||| |||| ||||||||||||||||| ||| ||||||    
T  17458705 aaaatggtgtgtttttacatgaatcaaagtgtgatatttagactactaaatttaccactattacatgtgtgaaa 17458778  T

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Target: scaffold0221 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 18173 - 18100
Alignment:
Q  21 aaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactattatatgagtgaaa 94  Q
    |||||||||  |||||||||  |  |||||||||||||||||||| ||||||||||| ||||| ||| ||||||    
T  18173 aaaatggtgtatttttacataaatcaaagtgtggtatttatactactaaatttaccattattacatgtgtgaaa 18100  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 18917135 - 18917208
Alignment:
Q  21 aaaatggtgagtttttacatggactaaagtgtggtatttatactattaaatttaccactattatatgagtgaaa 94  Q
    |||||| || ||||||||||| | ||||||||  ||||||||||| ||||||||||| ||||| ||| ||||||    
T  18917135 aaaatgatgtgtttttacatgaattaaagtgtaatatttatactactaaatttaccattattacatgtgtgaaa 18917208  T

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