View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10586_low_2 (Length: 491)

Name: NF10586_low_2
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10586_low_2
NF10586_low_2
[»] chr5 (7 HSPs)
chr5 (170-469)||(26353220-26353519)
chr5 (79-169)||(32325811-32325901)
chr5 (79-169)||(7992408-7992498)
chr5 (79-169)||(12904980-12905070)
chr5 (173-251)||(9816563-9816641)
chr5 (118-169)||(34641930-34641981)
chr5 (358-392)||(38434774-38434808)
[»] chr3 (11 HSPs)
chr3 (170-394)||(26648626-26648848)
chr3 (79-174)||(53208685-53208780)
chr3 (79-165)||(32130160-32130246)
chr3 (178-341)||(20047330-20047496)
chr3 (79-169)||(7322855-7322945)
chr3 (97-169)||(9454604-9454676)
chr3 (170-345)||(20014618-20014793)
chr3 (424-469)||(26648844-26648889)
chr3 (186-229)||(26654636-26654680)
chr3 (278-344)||(20006701-20006767)
chr3 (399-433)||(20014497-20014531)
[»] chr7 (5 HSPs)
chr7 (78-169)||(36167730-36167821)
chr7 (80-169)||(19886572-19886661)
chr7 (80-169)||(32775171-32775260)
chr7 (79-170)||(12859245-12859336)
chr7 (126-171)||(11600122-11600167)
[»] chr8 (8 HSPs)
chr8 (79-167)||(1548139-1548227)
chr8 (79-168)||(34784519-34784608)
chr8 (79-170)||(23033395-23033486)
chr8 (79-165)||(3117707-3117793)
chr8 (84-170)||(3277517-3277603)
chr8 (79-169)||(20900774-20900864)
chr8 (94-141)||(29168561-29168608)
chr8 (133-169)||(15657347-15657383)
[»] chr2 (6 HSPs)
chr2 (79-167)||(44673172-44673260)
chr2 (79-169)||(25438287-25438377)
chr2 (96-165)||(37154903-37154972)
chr2 (118-169)||(6536545-6536596)
chr2 (118-170)||(21006375-21006427)
chr2 (118-170)||(24132210-24132262)
[»] chr1 (1 HSPs)
chr1 (198-393)||(1718684-1718879)
[»] chr6 (1 HSPs)
chr6 (79-171)||(13425676-13425768)
[»] chr4 (5 HSPs)
chr4 (79-169)||(16497910-16498000)
chr4 (79-167)||(2588491-2588579)
chr4 (78-167)||(5650758-5650847)
chr4 (94-169)||(52249500-52249575)
chr4 (118-169)||(28075449-28075500)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 170 - 469
Target Start/End: Complemental strand, 26353519 - 26353220
Alignment:
Q  170 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactctt-attgtgttgaaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26353519 accaccatcatcttcttcttaaaactttattttgtttttgaattcccttcatgaaactcacgacagtgatgctcttttcatactcttgattgtgttgaaa 26353420  T
Q  269 acaattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggc 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26353419 acaattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggc 26353320  T
Q  369 atgagtaacacatattttgctatgtaaatcatgaagtgaatctaaagccaaactcatgtatatattattaacactcgagcttcctatctgaagtgaagca 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26353319 atgagtaacacatattttgctatgtaaatcatgaagtgaatctaatgccaaactcatgt-tatattattaacacttgagcttcctatctgaagtgaagca 26353221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 32325811 - 32325901
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  32325811 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtacgatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 32325901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 7992408 - 7992498
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  7992408 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 7992498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 12904980 - 12905070
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||    
T  12904980 ggttcgtaagtaggatcgaagcatggtcgatgtgttgtggcacgtaagatcgtgcgatcctacgtgctggaactcgttcctgactaccttg 12905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 9816563 - 9816641
Alignment:
Q  173 accatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcata 251  Q
    |||| |||| |||||||||| |||||||||| |||| |||||||||| ||||||||| |||||||||||| ||||||||    
T  9816563 accaccatcgtcttcttaaacctttattttgctttttaattctcttcctgaaactcatgacagtgatgctattttcata 9816641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 34641930 - 34641981
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  34641930 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttg 34641981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 38434808 - 38434774
Alignment:
Q  358 gtagtattggcatgagtaacacatattttgctatg 392  Q
    ||||||||||||||| |||||||||||||||||||    
T  38434808 gtagtattggcatgactaacacatattttgctatg 38434774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 170 - 394
Target Start/End: Original strand, 26648626 - 26648848
Alignment:
Q  170 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactcttattgtgttgaaaa 269  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||| ||||||  ||||||||||||||| |   | |||||| ||    
T  26648626 accaccatcatctttttcttaaaactttaatttgtttttgaattctcctcctgaaactcatgacagtagtgctcttttcatactgtccatttgttgataa 26648725  T
Q  270 caattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggca 369  Q
    |||  ||||||  ||||| || ||||||||||||||||   ||||||||||||| ||||||||||| |||||||||  || | |||| |||| |||||||    
T  26648726 caaaggaaggagaaagtagtattagttttaatgagttatgatatatatttttatcaactgatatgcctgtgttattatttatctataagtagcattggca 26648825  T
Q  370 tgagtaacacatattttgctatgta 394  Q
    ||| || |||  |||||||||||||    
T  26648826 tgactagcac--attttgctatgta 26648848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 53208685 - 53208780
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttgaccac 174  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  53208685 ggtttgtaagtaggatcgaaacacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttgcccac 53208780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 32130246 - 32130160
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 165  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||    
T  32130246 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgcgactcgttcctgactac 32130160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 341
Target Start/End: Original strand, 20047330 - 20047496
Alignment:
Q  178 catcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactct-tattgtgttgaaaacaattga 276  Q
    ||||||| ||||||||  |||| ||||||||||||| | ||||| ||||| | ||||||||| ||||||||||||||| |||| |||||| ||||| |||    
T  20047330 catcttcatcttaaaaagttatcttgtttttgaattttgttcatcaaacttatgacagtgattctcttttcatactctctattttgttgataacaaatga 20047429  T
Q  277 aggaataa--gtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgt 341  Q
    ||||  ||   ||| | ||||||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  20047430 aggataaattttaagattagttttgatgagttatgctatatatttttattaactgatatgattgtgt 20047496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 7322945 - 7322855
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||| |  ||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||    
T  7322945 ggttcgtaagtagaactgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctggctaccttg 7322855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 9454676 - 9454604
Alignment:
Q  97 aagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||    
T  9454676 aagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggaatcgttcttgactaccttg 9454604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 170 - 345
Target Start/End: Complemental strand, 20014793 - 20014618
Alignment:
Q  170 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactctt-attgtgttgaaa 268  Q
    ||||||| |||||||||||||||| ||| | ||||||||||||||| ||| ||||||||   || ||||  || ||||||||||||  ||| |||||| |    
T  20014793 accaccaccatcttcttcttaaaatttt-tgttgtttttgaattctgttcctgaaactcgttacggtgacacttttttcatactctccattttgttgata 20014695  T
Q  269 acaattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttatt 345  Q
    | || ||||||   |||||||||||| ||| ||||||||   ||||| |||||||||||||||||| ||| ||||||    
T  20014694 agaaatgaaggcggaagtaatactagctttgatgagttatgatatatgtttttattaactgatatgattgggttatt 20014618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 469
Target Start/End: Original strand, 26648844 - 26648889
Alignment:
Q  424 atgtatatattattaacactcgagcttcctatctgaagtgaagcat 469  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||    
T  26648844 atgtatatattatcaacacttgagcttcctatctgaagtgaagcat 26648889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 26654636 - 26654680
Alignment:
Q  186 tcttaaaactttat-tttgtttttgaattctcttcatgaaactca 229  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  26654636 tcttaaaactttatatttgtttttgaattctcttcatgaaactca 26654680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 20006767 - 20006701
Alignment:
Q  278 ggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttat 344  Q
    ||||||||||||||||||||  || |||||   ||||| ||||||||| ||| ||||||||||||||    
T  20006767 ggaataagtaatactagtttagataagttatgatatatgtttttattatctgctatgcttgtgttat 20006701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 433
Target Start/End: Complemental strand, 20014531 - 20014497
Alignment:
Q  399 atgaagtgaatctaaagccaaactcatgtatatat 433  Q
    |||||||||||||||| ||||||||||||||||||    
T  20014531 atgaagtgaatctaaatccaaactcatgtatatat 20014497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 36167730 - 36167821
Alignment:
Q  78 tggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  36167730 tggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 36167821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 19886661 - 19886572
Alignment:
Q  80 gttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||    
T  19886661 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgtgctgggactcgttcctgactaccttg 19886572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 32775260 - 32775171
Alignment:
Q  80 gttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||    
T  32775260 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaaggtcgtgtgatcctacatgctgggactcgttcctgactaccttg 32775171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 12859245 - 12859336
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  12859245 ggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttga 12859336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 11600122 - 11600167
Alignment:
Q  126 gatcgtgcgatcctacatgccgggactcgttcctgactaccttgac 171  Q
    ||||||||||||||||| || |||||||| ||||| ||||||||||    
T  11600122 gatcgtgcgatcctacaagctgggactcgatcctggctaccttgac 11600167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 1548227 - 1548139
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 167  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  1548227 ggttcgtaagtaggatcgaagcacgttcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggactcgttcctgactacct 1548139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 34784519 - 34784608
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacctt 168  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  34784519 ggtttgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacctt 34784608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 23033486 - 23033395
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||    
T  23033486 ggttcgtaagtaggatcgaagcacggtcgaggtgttgtggcacgtaagatcatgcgatcctacatgctgggactcgttcctgagtaccttga 23033395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 3117793 - 3117707
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 165  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||| ||||||| |||||||||||    
T  3117793 ggttcgtaagtaggatcgaagcacggtcgaggtactgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 3117707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 3277603 - 3277517
Alignment:
Q  84 gtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    ||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  3277603 gtaagtaggattgaagcacggtcgaggtgttgtggcacgtaagatcgtgcgatcctacatgctgggattcgttcctgactaccttga 3277517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 20900864 - 20900774
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||    
T  20900864 ggtttgtaagtaggatcgaagcacagtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggacttgttcctgactaccttg 20900774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 29168561 - 29168608
Alignment:
Q  94 tcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctac 141  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  29168561 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctac 29168608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 15657383 - 15657347
Alignment:
Q  133 cgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  15657383 cgatcctacgtgctgggactcgttcctgactaccttg 15657347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 44673260 - 44673172
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 167  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  44673260 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 44673172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 25438377 - 25438287
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||    
T  25438377 ggttcgtaagtaggatcaaagcacggtcgaggtgctgtggcacgtaagatcatgcgatcctacgtgctgggactcgttcctgactaccttg 25438287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 37154903 - 37154972
Alignment:
Q  96 gaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 165  Q
    ||||||||| |||| ||  |||||||||| ||||||||||||||||  |||||||||||||| |||||||    
T  37154903 gaagcacggtcgagatgtcgtggcacgtaagatcgtgcgatcctacgagccgggactcgttcttgactac 37154972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 6536596 - 6536545
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  6536596 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttg 6536545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 21006375 - 21006427
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    ||||||| |||||||||||||||| ||| |||||||| ||||| |||||||||    
T  21006375 gcacgtaagatcgtgcgatcctacgtgctgggactcgatcctggctaccttga 21006427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 24132262 - 24132210
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 170  Q
    ||||||| |||||||||||||||| ||| |||| ||| ||||| |||||||||    
T  24132262 gcacgtaagatcgtgcgatcctacgtgctgggattcgatcctggctaccttga 24132210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 198 - 393
Target Start/End: Original strand, 1718684 - 1718879
Alignment:
Q  198 attttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactctt-attgtgttgaaaacaattgaaggaataagtaatactagtt 296  Q
    ||||||||||||| || |||| |||||||||| |||| |||||||||||| |||||||| ||| |||||| ||||| |||||||  |||||||| |||||    
T  1718684 attttgtttttgacttttctttatgaaactcatgacattgatgctctttt-atactcttcattttgttgataacaaatgaaggagaaagtaatattagtt 1718782  T
Q  297 ttaatgagtta--atctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggcatgagtaacacatattttgctatgt 393  Q
    |||||||||||  || |||| ||||||||||||||||||||||||||||||  || | |||| |||| ||| |||||| ||| ||  ||||||||||||    
T  1718783 ttaatgagttatgatgtataaatttttattaactgatatgcttgtgttattatttatctataagtaggatttgcatgactaagac--attttgctatgt 1718879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 13425676 - 13425768
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttgac 171  Q
    |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||    
T  13425676 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacataagatcgtgcgatcctacgtgctgcgactcgttcctgactaccttgac 13425768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 16497910 - 16498000
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  16497910 ggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacatacgatcgtgcgatcctacgtgctgggactcgttcttgactaccttg 16498000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 2588491 - 2588579
Alignment:
Q  79 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 167  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  2588491 ggttcgtaagtaggaccgaagtacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 2588579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 5650758 - 5650847
Alignment:
Q  78 tggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 167  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||| |||  ||||||||||||||||||||    
T  5650758 tggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtgagattgtgcgatcctacgtgcttggactcgttcctgactacct 5650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 52249500 - 52249575
Alignment:
Q  94 tcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||| | | ||||||| |||||||||||||||    
T  52249500 tcgaagcacggtagaggtgctgtggcacgtaagatcgtgcgatcctacgtactgggactcattcctgactaccttg 52249575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 28075500 - 28075449
Alignment:
Q  118 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 169  Q
    ||||||| ||||||||||||||||| || |||||||| ||||| ||||||||    
T  28075500 gcacgtaagatcgtgcgatcctacaagctgggactcgatcctggctaccttg 28075449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University