View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10586_low_21 (Length: 227)
Name: NF10586_low_21
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_low_21 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22841749 - 22841975
Alignment:
| Q |
1 |
aagtcagcctgttccatcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacagctataaaatacag |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22841749 |
aagtcagcctgttccgtcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacagctataaaatacag |
22841848 |
T |
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| Q |
101 |
tttttgacatatttgttgaatgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaaccttaataacataaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22841849 |
tttttgacatatttgttgaatgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaaccttaataacataaattt |
22841948 |
T |
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| Q |
201 |
gttctccaaaaacattactgtcttttc |
227 |
Q |
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| T |
22841949 |
gttctccaaaaacattactgtcttttc |
22841975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22877288 - 22877519
Alignment:
| Q |
1 |
aagtcagcctgttccatcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacagctataaaatacag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
22877288 |
aagtcagcctgttccatcggtcatatgtgctggcaagttgcggggaattggaggtaaatcacgaggcaatttacttgggattgacagctataaaatacag |
22877387 |
T |
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| Q |
101 |
tttttgacatatttgttgaatgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaac------------cttaa |
188 |
Q |
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| T |
22877388 |
tttttgacatatt-------tgttgagcaatctttccactctaaaggagagaatttttaaggaatttagaggtttagagtaaccttataaagtaacttaa |
22877480 |
T |
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| Q |
189 |
taacataaatttgttctccaaaaacattactgtcttttc |
227 |
Q |
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| T |
22877481 |
taacataactttgttctccaaaaactttactgtcttttc |
22877519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22895048 - 22895279
Alignment:
| Q |
1 |
aagtcagcctgttccatcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacagctataaaatacag |
100 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||| |
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| T |
22895048 |
aagtcagcctgtttcattggtcatatgtgctggcaagttgcagggagatggaggtaaatcacgaggcaatttactcaggattgacaactataaaattcag |
22895147 |
T |
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| Q |
101 |
tttttgacatatttgttgaatgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaac------------cttaa |
188 |
Q |
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||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
22895148 |
tttttgacatatt-------tgtcgagcaatctttctactctaaatcagagaatttttaaggaatttagaggttcagagtaaccttaaaaagtaacttaa |
22895240 |
T |
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| Q |
189 |
taacataaatttgttctccaaaaacattactgtcttttc |
227 |
Q |
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|||||||| |||||||||||||||| ||||||||||||| |
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| T |
22895241 |
taacataactttgttctccaaaaactttactgtcttttc |
22895279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 22870841 - 22870908
Alignment:
| Q |
121 |
tgttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaaccttaa |
188 |
Q |
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| T |
22870841 |
tgttgagcaatctttctattctaaaggagagaatttttaaggaatttagaggtttagagtaaccttaa |
22870908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 22811146 - 22811081
Alignment:
| Q |
123 |
ttgagcaatctttctactctaaaagagagaatttttaaggaatttagaggtttagagtaaccttaa |
188 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22811146 |
ttgatcaatctttctactctaaaggagagaatttttaaggaatttagaggtttagagtaaccttaa |
22811081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 22886820 - 22886914
Alignment:
| Q |
10 |
tgttccatcggtcatatgtgctggcaagttgcccggagatggaggtaaatcaggaggcaatttactcgggattgacagctataaaatacagtttt |
104 |
Q |
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|||||||||||||| ||||| |||||| |||| ||||||||||| |||||| || |||||||||| ||||||||||||||||||||| |||| |
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| T |
22886820 |
tgttccatcggtcacatgtgttggcaaattgcagggagatggaggcaaatcaccgggtaatttactcgtgattgacagctataaaatacaatttt |
22886914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 22870916 - 22870959
Alignment:
| Q |
184 |
cttaataacataaatttgttctccaaaaacattactgtcttttc |
227 |
Q |
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| T |
22870916 |
cttaataacataactttgttcttcaaaaactttactgtcttttc |
22870959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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