View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10586_low_22 (Length: 219)
Name: NF10586_low_22
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 22842060 - 22842259
Alignment:
| Q |
1 |
gctttttcacacatgcccacatcacctaaaatgagcttaccatattttctacaatgggagttatctcaactttttctctactgtttatttaagtcagggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22842060 |
gctttttcacacatgcccacatcacctaaaatgagcttaccatattttctacaatgggagttatctcaactttttctctactgtttatttaagtcagggt |
22842159 |
T |
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| Q |
101 |
taaaaactatgtaatggagtaattgtaaaatctaactttcttttttaggtgctgcactatatgtaaagagaagtgacatattggctctcgctataggtat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22842160 |
taaaaactatgtaatggactaattgtaaaatctaactttcttttttaggtgctgcactatatgtaaagagaagtgacatattggctctcgctataggtat |
22842259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 22877605 - 22877803
Alignment:
| Q |
2 |
ctttttcacacatgcccacatcacctaaaatgagcttaccatattttctacaatgggagttatctcaactttttctctactgtttatttaagtcagggtt |
101 |
Q |
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||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||| |
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| T |
22877605 |
ctttttctgacatgcccacaccacctaaaataagcttaccatattttatacaatgggagttatctcaactttttttctactgtttattcaattcagggtt |
22877704 |
T |
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| Q |
102 |
aaaaactatgtaatggagtaattgtaaaatctaactttcttttttaggtgctgcactatatgtaaagagaagtgacatattggctctcgctataggtat |
200 |
Q |
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| T |
22877705 |
aaaaactatgtaatggactaattgtaaaacctaactttcttttttaggtgctgcactatatgtaaagagaagtgacatattggctctcgctataggtat |
22877803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 22811968 - 22812166
Alignment:
| Q |
1 |
gctttttcacacatgcccacatcacctaaaatgagcttaccatattttctacaatgggagttatctcaactttttctctactgtttatttaagtcagggt |
100 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
22811968 |
gctttttctcacatgcccacaccacctaaaatgagcttaccatattttctacaatgggagttatctcaactttttctcta-tgtttatttagttcagggt |
22812066 |
T |
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| Q |
101 |
taaaaactatgtaatggagtaattgtaaaatctaactttcttttttaggtgctgcactatatgtaaagagaagtgacatattggctctcgctataggtat |
200 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |
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| T |
22812067 |
taaaaactatgtaatggactaattgtaaaacctaactttcttttttaggtgctgcactgtctgtaaagagaagtgacatattggctcttgctataggtat |
22812166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 22895331 - 22895536
Alignment:
| Q |
3 |
tttttcacacatgcccacatcacctaaaatgagcttaccatattttctacaatgggagttatctcaactttttctctactgtttatttaagt-------- |
94 |
Q |
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||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||||| | |
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| T |
22895331 |
tttttcacatatgcccacacgacctaaaatgagcttaccattttttctacaatgg-agccatctcaactttttctctgctgtttatttaatttatttaat |
22895429 |
T |
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| Q |
95 |
-cagggttaaaaactatgtaatggagtaattgtaaaatctaactttcttttttaggtgctgcactatatgtaaagagaagtgacatattggctctcgcta |
193 |
Q |
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||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
22895430 |
tcagggttaaaaaccatgtaatggactaattttaaaacctaactttcttttttaggtgctgcactgtctgtaaagagaagtgacatattggctcttgcta |
22895529 |
T |
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| Q |
194 |
taggtat |
200 |
Q |
| |
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||||||| |
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| T |
22895530 |
taggtat |
22895536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22871044 - 22871100
Alignment:
| Q |
1 |
gctttttcacacatgcccacatcacctaaaatgagcttaccatattttctacaatgg |
57 |
Q |
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|||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
22871044 |
gcttttccacacatgcccacaccacccaaaatgagcttaccatattttctacaatgg |
22871100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 22798973 - 22799027
Alignment:
| Q |
37 |
ttaccatattttctacaatgggagttatctcaactttttctctactgtttattta |
91 |
Q |
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||||||| ||||||||||| |||| ||||||||| ||||||| || ||||||||| |
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| T |
22798973 |
ttaccattttttctacaattggagctatctcaaccttttctccaccgtttattta |
22799027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 15865701 - 15865641
Alignment:
| Q |
37 |
ttaccatattttctacaatgggagttatctcaactttttctctactgtttatttaagtcag |
97 |
Q |
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||||||| ||||||||||| ||| ||||||||||||||||| || ||||||||| |||| |
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| T |
15865701 |
ttaccattttttctacaattggaactatctcaactttttctccaccatttatttaattcag |
15865641 |
T |
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