View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10586_low_3 (Length: 461)
Name: NF10586_low_3
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Complemental strand, 44691694 - 44691262
Alignment:
| Q |
13 |
agactcttggaaatagtaaacttggcgggttcagtgagtgagaaataaggtgccaaaacacatttatcaccaccaatcttctcaaaatcttgcaagcatc |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44691694 |
agactcttggaaatagtaaacttggtgggttcagtgagtgagaaataaggtgccaaaacacatttatcaccaccaatcttctcaaaatcttgcaagcatc |
44691595 |
T |
|
| Q |
113 |
acaacgactctctgagccgagtttgtcaactcagcacatggtttcatatgctcaacattgatctcacatattggtatattggttaattaaataccaatat |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44691594 |
acaacgactctctgagctgagtttgtctactcagcacatggtttcatatgctcgacattgatctcacatattggtatattggttaattatataccaatat |
44691495 |
T |
|
| Q |
213 |
atcaatatcagaaggaagattcatgagaatgatcatacaagggagactttaatttgtctttgcttctttatttttgtttcctttatgttctattctgctt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44691494 |
atcaatatcagaaggaagattcatgagaatgatcatacaagggagactttaatttgtctttgcttctttatttttgtttcctttatgttctcttctgctt |
44691395 |
T |
|
| Q |
313 |
aattaagtagttggggcttgagtggttaatgagaggcaattaaagtctaaagatagcataaacccctatggacatgtcataaactttctcatcaaacaat |
412 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44691394 |
aattaagtagttggggcttgagtggttaatgagaggcaattaaagtctaaagatagcataaacccctatggacatgtcataaactttctcatcaaacaat |
44691295 |
T |
|
| Q |
413 |
gtacgcatcaattactttctcatctgttaatgg |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
44691294 |
gtacgcatcaattactttctcatctgttaatgg |
44691262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 13171750 - 13171598
Alignment:
| Q |
22 |
gaaatagtaaacttggcgggttcagtgagtgagaaataaggtgccaaaacacatttatcaccaccaatcttctcaaaatcttgcaagcatcacaacgact |
121 |
Q |
| |
|
||||| ||||||||||| ||||||||| | ||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||| || || |||| |
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|
| T |
13171750 |
gaaatggtaaacttggcaggttcagtgggagagaaataaggtgtcaaaacacattcatcacca---atcttctcaaaatattgcaagcagcagaatgact |
13171654 |
T |
|
| Q |
122 |
ctctgagccgagtttgtcaactcagcacatggtttcatatgctcaacattgatctc |
177 |
Q |
| |
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|||| ||| || ||| ||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
13171653 |
ctctaagctgattttttcaactcagcacatggtctcatatgctcaacactgatctc |
13171598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 44680935 - 44680799
Alignment:
| Q |
13 |
agactcttggaaatagtaaacttggcgggttcagtgagtgagaaataaggtgccaaaacacatttatcaccaccaatcttctcaaaatcttgcaagcatc |
112 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | |
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|
| T |
44680935 |
agactcttagaaatggtaaacttggcaagttcagtgagagagaaataaggtgccaaaacacatttat---caacaatcttctcaaaatcttgcaagcagc |
44680839 |
T |
|
| Q |
113 |
acaacgactctctgagccgagtttgtcaactcagcacatg |
152 |
Q |
| |
|
||| |||||| ||||| |||||| |||| |||||||||| |
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|
| T |
44680838 |
acagtgactctatgagctgagtttttcaattcagcacatg |
44680799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 247 - 401
Target Start/End: Original strand, 31558634 - 31558800
Alignment:
| Q |
247 |
atacaagggaga-ctttaatttgtctttgcttctttatttttgtttcctttatgt-----------tctattctgcttaattaagtagttggggcttgag |
334 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| |
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| T |
31558634 |
atacaagtgagatctttaatttgtctttgcttctttatttttgtttcctttatgtcctattaatgttctattatgcttaattaagtagctggggcttgag |
31558733 |
T |
|
| Q |
335 |
tggttaatgagaggcaattaaagtctaaagatagcataaacccctatggacatgtcataaactttct |
401 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
31558734 |
tggttaatgagaggcaattaaagtaaaaagatagcataagccctaatggacatgtcataaactttct |
31558800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 39790356 - 39790287
Alignment:
| Q |
54 |
gaaataaggtgccaaaacacatttatcaccac-caatcttctcaaaatcttgcaagcatcacaacgactc |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||| ||||| ||||| |
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|
| T |
39790356 |
gaaataaggtgccaaaacacatttctcagcacatcttcttcttaaaatcttgcaagcagcacaaggactc |
39790287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 41983364 - 41983516
Alignment:
| Q |
13 |
agactcttggaaatagtaaacttggcgggttcagtgagtgagaaataaggtgccaaaacacatttatcaccaccaatcttctcaaaatcttgcaagcatc |
112 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| ||||||| | | |
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|
| T |
41983364 |
agactctcagaaatggtaaacttggcaggttcagtggaagagaaataaggtgccaaaacacatttat---cagcaatcttctcaaaatattgcaagaagc |
41983460 |
T |
|
| Q |
113 |
acaacgactctctgagccgagtttgtcaactcagcacatggtttcatatgctcaaca |
169 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||| ||||| ||||||||| |||| |
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|
| T |
41983461 |
acaatgactctctgagctgagtttttcaactcagca-atggtctcatatgcttaaca |
41983516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 367
Target Start/End: Complemental strand, 34595166 - 34595034
Alignment:
| Q |
247 |
atacaagggaga-ctttaatttgtctttgcttctttatttttgtttcctttat-----------gttctattctgcttaattaagtagttggggcttgag |
334 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
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|
| T |
34595166 |
atacaagtgagatctttaatttgtgtttgcttctttatttttgtttcctttattttatattagtgttctattttgcttaattaactagttggggcttgag |
34595067 |
T |
|
| Q |
335 |
tggttaatgagaggcaattaaagtctaaagata |
367 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| |
|
|
| T |
34595066 |
tggttaataagaggcaattaaagtcaaaagata |
34595034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 297 - 399
Target Start/End: Original strand, 9418701 - 9418804
Alignment:
| Q |
297 |
atgttctattctgcttaattaagtagttgggg-cttgagtggttaatgagaggcaattaaagtctaaagatagcataaacccctatggacatgtcataaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| || |||||||| |||||||| |
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|
| T |
9418701 |
atgttctattctgcttaattaagtagttgggggcttgagtggttaatgagaggcaattaaagtaaaaagatagtataagtccttatggacacgtcataaa |
9418800 |
T |
|
| Q |
396 |
cttt |
399 |
Q |
| |
|
|||| |
|
|
| T |
9418801 |
cttt |
9418804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 20208351 - 20208272
Alignment:
| Q |
320 |
tagttggggcttgagtggttaatgagaggcaattaaagtctaaagatagcataaacccctatggacatgtcataaacttt |
399 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
20208351 |
tagttgggtcttaagtggttattgagaggcaattaaagtcaaaagatagcataagcccttatggacatgtcataaacttt |
20208272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22428088 - 22428159
Alignment:
| Q |
55 |
aaataaggtgccaaaacacatttatcaccacca-atctt---ctcaaaatcttgcaagcatcacaacgactc |
122 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
22428088 |
aaataaggtgccaaaacacatttatcagcagcacatcttctcctcaaaatcttgcaagcagcacaaggactc |
22428159 |
T |
|
Back To:
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