View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10586_low_4 (Length: 404)
Name: NF10586_low_4
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 30371231 - 30370838
Alignment:
| Q |
1 |
agcagatgtgattccaccatcaactgaaagattatgagcagttacaaatccagattcatcactagccaaaaacagagcagcctgtgcgacatcatcagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30371231 |
agcagatgtgattccaccatcaactgaaagattatgagcagttacaaatccagattcatcactagccaaaaacagagcagcctgtgcgacatcatcagtt |
30371132 |
T |
|
| Q |
101 |
gttgcacctctccctttaagcaaacttgcattcatcccaataaactcactcaattgttcactagtcatatcaacttcaccataacatctaaaagcattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30371131 |
gttgcacctctccctttaagcaaacttgcattcatcccaataaactcactcaattgttcactagtcatatcaacttcaccataacatctaaaagcattca |
30371032 |
T |
|
| Q |
201 |
aaagcatcttagaaggaacgccgtgcggagaaacacaattaacgcgaatcaaatgaacacctaattcgcacgctgcacttctcattaatccatccatagc |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30371031 |
aaagcatctcagaaggaacgccgtgcggagaaacacaattaacgcgaatcaaatgaacacctaattcgcacgccgcacttctcattaatccatccatagc |
30370932 |
T |
|
| Q |
301 |
tgattttgacattgtatagccatgtgaagcaaatccacctatagttgcagctgcacttgaagtacaaataattgatcctccttttttacctttg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30370931 |
tgattttgacattgtatagccatgtgaagcaaatccacctatagttgcagctgcacttgaagtacaaataattgatcctccttttttacctttg |
30370838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University