View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10586_low_5 (Length: 398)
Name: NF10586_low_5
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 28 - 379
Target Start/End: Complemental strand, 34910476 - 34910125
Alignment:
| Q |
28 |
ctgcatcctgtttatggatttgttccgcccttcccccacctccacaatcctgcaagtatatcgatatcatgggaacgacaacaagaacactgtgaaggaa |
127 |
Q |
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| T |
34910476 |
ctgcatcctgtttatggatttgttccgcccttcccccacctccacaatcctgcaagtatatcgatatcatgggaacgacaacaagaacactatgaaggaa |
34910377 |
T |
|
| Q |
128 |
tgtgatttctttcagttatatgtgttctctagtcgatgctaatttacggttctttttaaagacctaaagattacataacgactaagatttgtattagcta |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910376 |
tgtgatttctttcagttatatgtgttctctagtcgatgctaatttacggttctttgtaaagacctaaagattacataacgactaagatttgtattagcta |
34910277 |
T |
|
| Q |
228 |
gtttatgccatctttcttttattaatatctaataatggtattcattagcatcttttggcttacttttctgccttttttattgttattatattttgcagtt |
327 |
Q |
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| T |
34910276 |
gtttatgccatctttcttttattaatatctaataatggtattcattagcatcttttggcttacttttctgccttttttattgttattatattttgcagtt |
34910177 |
T |
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| Q |
328 |
ttctaattctatctgagaaccaactctcttccttcccaggatcgtcattctt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910176 |
ttctaattctatctgagaaccaactctcttccttcccaggatcgtcattctt |
34910125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 179 - 375
Target Start/End: Original strand, 28543241 - 28543439
Alignment:
| Q |
179 |
ctttttaaagacctaaagattacataacgactaagatttgtattagctagtttatgccatctttcttttattaatatctaataatggtattcattagcat |
278 |
Q |
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| T |
28543241 |
ctttttaaagacctaaagattacataacgactaagatatgtgttagctagtttatgtcatctttcttttgttaatatctaataatggtaatcattagcat |
28543340 |
T |
|
| Q |
279 |
cttttggcttacttttctgccttttttattg---ttattatattttgcagttttctaattctatctgagaaccaactctcttccttcccaggatcgtcat |
375 |
Q |
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| T |
28543341 |
cttttggcttagttttctcccttttttattgttattattatattttgc-gttttctaattctatttgaaaaccgactctcttccttcccaggatcatcat |
28543439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 107 - 352
Target Start/End: Complemental strand, 34896602 - 34896353
Alignment:
| Q |
107 |
aacaagaacactgtgaaggaatgtgatttctttcagttatatgtgttctctagtcgatgctaatttacggttctttttaaagacctaaagattacataac |
206 |
Q |
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| T |
34896602 |
aacaagaacagtacgaaagaatgtgatttctttcagctatatgcattctctattcaattttagtttacatttctttttgaagacctaaagattacgtaac |
34896503 |
T |
|
| Q |
207 |
gactaagatttgtattagctagtttatgccatctttcttttattaatatctaataatggtattcattagcatcttttggcttacttttctgcctttttta |
306 |
Q |
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||| ||||||||||||||||||||||| | || |||||| || ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
34896502 |
aactgagatttgtattagctagtttatgtcgtccttctttcat---tatctaataatggtaatcattagcatcttttggcttacttttctgcc-ttttta |
34896407 |
T |
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| Q |
307 |
ttg--------ttattatattttgcagttttctaattctatctgagaaccaact |
352 |
Q |
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||| |||||| |||||||||||||||||||||| |||||| |||||| |
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| T |
34896406 |
ttgtttttatattattagattttgcagttttctaattctaactgagatccaact |
34896353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 201 - 379
Target Start/End: Original strand, 28545497 - 28545678
Alignment:
| Q |
201 |
cataacgactaagatttgtattagctagtttatgccatctttcttttattaatatctaataatggtattcattagcatcttttggcttacttttctgcc- |
299 |
Q |
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||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| |
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| T |
28545497 |
cataaagactaagattcgtattagctagtttatgtcatctttcttttattaatagctaataatggtaaatattagcatcttttggcttacgtttctgcct |
28545596 |
T |
|
| Q |
300 |
-ttttttattg--ttattatattttgcagttttctaattctatctgagaaccaactctcttccttcccaggatcgtcattctt |
379 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||| | |||||| | | |||| |||||||||| ||| |||| |
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| T |
28545597 |
tttttttattgtattattatattttgtagttttctaattctatctta-aaccaagtttgttccctcccaggatcatcactctt |
28545678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 34905293 - 34905183
Alignment:
| Q |
111 |
agaacactgtgaaggaatgtgatttctttcagttatatgtgttctctagtcgatgctaatttacggttctttttaaagacctaaagattacataacgact |
210 |
Q |
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|||||| | ||||||||||||||||||||||| ||||||| ||||||| || || |||||||| |||||||| |||||||||||||||||| || ||| |
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| T |
34905293 |
agaacagtatgaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaact |
34905194 |
T |
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| Q |
211 |
aagatttgtat |
221 |
Q |
| |
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|||||||||| |
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| T |
34905193 |
gagatttgtat |
34905183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 352
Target Start/End: Complemental strand, 34905184 - 34905077
Alignment:
| Q |
252 |
atatctaataatggtattcattagcatcttttggcttacttttctgccttttttattg--------ttattatattttgcagttttctaattctatctga |
343 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||| |||| |
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| T |
34905184 |
atatctaataatggtaatcattggcatcttttggcttacttatctgcct-ttttattgtttttatattattagattttgcagttttctaattctaactga |
34905086 |
T |
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| Q |
344 |
gaaccaact |
352 |
Q |
| |
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||||||||| |
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| T |
34905085 |
gaaccaact |
34905077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 28543167 - 28543232
Alignment:
| Q |
81 |
aagtatatcgatatcatgggaacgacaacaagaacactgtgaaggaatgtgatttctttcagttatat |
148 |
Q |
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| T |
28543167 |
aagtatatcgatatcatgggga--acaacaagaacactatgaaggaatgtgatttctttcagctatat |
28543232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 28543093 - 28543134
Alignment:
| Q |
32 |
atcctgtttatggatttgttccgcccttcccccacctccaca |
73 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
28543093 |
atcctgtttatcgatttgttccgcctttcccccacctccaca |
28543134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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