View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10586_low_6 (Length: 367)
Name: NF10586_low_6
Description: NF10586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10586_low_6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 49766658 - 49766310
Alignment:
| Q |
19 |
ctaatatcattttgaaacgtagcaaatcaactgcaacaccaagaagaggtagtaactctatggttgatgcagatgatgaatattttagtccaagaaaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49766658 |
ctaatatcattttgaaacgtagcaaatcaactgcaacaccaagaagaggtagtaactctatggttgatgcagatgatgaatattttagtccaagaaaaag |
49766559 |
T |
|
| Q |
119 |
aaatgggttttggtcttttctctatcattcttcaaaatcttcaacttcttccaagagctttagtaatactactgcttcagctaagcttaaggaaaagtgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49766558 |
aaatgggttttggtcttttctctatcattcttcaaaatcttcaacttcttccaagagctttagtaatactactgcttcagctaagcttaaggaaaagtgt |
49766459 |
T |
|
| Q |
219 |
tgttcaggttcttctttaggaagaaagaacgacattgttattgttnnnnnnnnnnnnnnnnntaacagtcctaatagcaacaacacaggttcttttgaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49766458 |
tgttcaggttcttctttaggaagaaagaacgacattgttattgttgaagaagaagaagaagataacagtcctaatagcaacaacacaggttcttttgaac |
49766359 |
T |
|
| Q |
319 |
gtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49766358 |
gtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctc |
49766310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 14138362 - 14138413
Alignment:
| Q |
316 |
aacgtaaagtttcaagatctagatctgttggatgtggtagcagaagcttctc |
367 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14138362 |
aacgtaaggtttcaagatctagatctgttggatgtggtagcagaagcttctc |
14138413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University