View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10587_high_1 (Length: 559)

Name: NF10587_high_1
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10587_high_1
NF10587_high_1
[»] chr7 (5 HSPs)
chr7 (431-541)||(16157174-16157284)
chr7 (431-541)||(21368462-21368572)
chr7 (437-538)||(22707516-22707614)
chr7 (268-359)||(44356652-44356743)
chr7 (398-435)||(21369457-21369494)
[»] chr3 (6 HSPs)
chr3 (431-541)||(33757787-33757897)
chr3 (438-541)||(13179704-13179807)
chr3 (438-541)||(13184362-13184465)
chr3 (398-435)||(13180726-13180763)
chr3 (398-435)||(13185260-13185297)
chr3 (398-435)||(33758804-33758841)
[»] chr2 (3 HSPs)
chr2 (431-541)||(21465086-21465196)
chr2 (431-541)||(44794571-44794681)
chr2 (431-541)||(44794894-44795004)
[»] scaffold0359 (1 HSPs)
scaffold0359 (431-541)||(8584-8694)
[»] scaffold0003 (1 HSPs)
scaffold0003 (431-541)||(289110-289220)
[»] chr8 (5 HSPs)
chr8 (431-541)||(18774121-18774231)
chr8 (431-541)||(16417373-16417483)
chr8 (431-525)||(17459690-17459784)
chr8 (268-359)||(20135328-20135419)
chr8 (398-435)||(18775140-18775177)
[»] chr6 (4 HSPs)
chr6 (431-541)||(21299213-21299323)
chr6 (431-538)||(9344249-9344353)
chr6 (398-435)||(12638793-12638830)
chr6 (398-435)||(21302617-21302654)
[»] chr4 (4 HSPs)
chr4 (431-541)||(11475790-11475900)
chr4 (398-435)||(34454924-34454961)
chr4 (450-538)||(34455906-34455994)
chr4 (398-435)||(11474846-11474883)
[»] chr1 (2 HSPs)
chr1 (431-541)||(37260555-37260665)
chr1 (407-435)||(37259621-37259649)
[»] scaffold0671 (2 HSPs)
scaffold0671 (431-541)||(2272-2382)
scaffold0671 (407-435)||(1227-1255)
[»] scaffold0065 (1 HSPs)
scaffold0065 (431-541)||(33597-33707)
[»] chr5 (2 HSPs)
chr5 (431-541)||(22821114-22821224)
chr5 (398-435)||(22825867-22825904)
[»] scaffold0002 (1 HSPs)
scaffold0002 (438-541)||(127181-127284)
[»] scaffold0512 (1 HSPs)
scaffold0512 (398-435)||(4-41)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 431 - 541
Target Start/End: Original strand, 16157174 - 16157284
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| | |||    
T  16157174 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcatttctttttggcacaccctttcattaacaatatttttagttcatttctagtgtt 16157273  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  16157274 ttgtgccttta 16157284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 21368572 - 21368462
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| || |||    
T  21368572 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcatttcctgtgtt 21368473  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  21368472 ttgtgccttta 21368462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 437 - 538
Target Start/End: Complemental strand, 22707614 - 22707516
Alignment:
Q  437 tcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgc 536  Q
    |||||||||| | ||||| |||||||||||||||||||  ||||||||||||||||| ||    |||||||||||| | | ||||||||| |||||||||    
T  22707614 tcaaatcattatcaaaattaatcccaatacataattttcttttccttttggcacatcatt---ataacaatattttcattccatttcttgtgttttgtgc 22707518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 44356652 - 44356743
Alignment:
Q  268 atgaataaaccgtccaactcccttcacacacaacctgaaaaacacttcattccaagcatgaacggggactccgtaagctcacaaccaggccc 359  Q
    |||||||||||||||||| |  |||||||||| |||||| ||  | |||||||||||||| | ||| || |||||| ||| |||||| ||||    
T  44356652 atgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaagcatgtatgggaacaccgtaaactcgcaaccaagccc 44356743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 21369494 - 21369457
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  21369494 agggcatggttgtccatgacacaagtgcttcaattcaa 21369457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 33757897 - 33757787
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  33757897 ttcaactcaaaccattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 33757798  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  33757797 ttgtgccttta 33757787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 438 - 541
Target Start/End: Complemental strand, 13179807 - 13179704
Alignment:
Q  438 caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcc 537  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||     
T  13179807 caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct 13179708  T
Q  538 ttta 541  Q
    ||||    
T  13179707 ttta 13179704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 438 - 541
Target Start/End: Complemental strand, 13184465 - 13184362
Alignment:
Q  438 caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcc 537  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||     
T  13184465 caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct 13184366  T
Q  538 ttta 541  Q
    ||||    
T  13184365 ttta 13184362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 13180763 - 13180726
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13180763 agggcatggttgtccatgacacaagtgcttcaattcaa 13180726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 13185297 - 13185260
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13185297 agggcatggttgtccatgacacaagtgcttcaattcaa 13185260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 33758841 - 33758804
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  33758841 agggcatggttgtccatgacacaagtgcttcaattcaa 33758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 21465196 - 21465086
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||| |||    
T  21465196 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 21465097  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  21465096 ttgtgccttta 21465086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 44794681 - 44794571
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  44794681 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 44794582  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  44794581 ttgtgccttta 44794571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 431 - 541
Target Start/End: Original strand, 44794894 - 44795004
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  44794894 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 44794993  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  44794994 ttgtgccttta 44795004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 8694 - 8584
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  8694 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 8595  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  8594 ttgtgccttta 8584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 431 - 541
Target Start/End: Original strand, 289110 - 289220
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||| |||    
T  289110 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 289209  T
Q  531 ttgtgccttta 541  Q
    ||| |||||||    
T  289210 ttgagccttta 289220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 18774231 - 18774121
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  18774231 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 18774132  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  18774131 ttgtgccttta 18774121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 16417483 - 16417373
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||| |||    
T  16417483 ttcaactcaaatcattgtcaaaattaatctcaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 16417384  T
Q  531 ttgtgccttta 541  Q
    ||| |||||||    
T  16417383 ttgcgccttta 16417373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 431 - 525
Target Start/End: Complemental strand, 17459784 - 17459690
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttctt 525  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  17459784 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaataattttagatcatttctt 17459690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 359
Target Start/End: Complemental strand, 20135419 - 20135328
Alignment:
Q  268 atgaataaaccgtccaactcccttcacacacaacctgaaaaacacttcattccaagcatgaacggggactccgtaagctcacaaccaggccc 359  Q
    |||||||||||||||||| |  |||||||||| |||||| ||  | |||||||||||||| | ||| || |||||| ||| |||||| ||||    
T  20135419 atgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaagcatgtatgggaacaccgtaaactcgcaaccaagccc 20135328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 18775177 - 18775140
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  18775177 agggcatggttgtccatgacacaagtgcttcaattcaa 18775140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 21299323 - 21299213
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  21299323 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 21299224  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  21299223 ttgtgccttta 21299213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 538
Target Start/End: Original strand, 9344249 - 9344353
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||  ||| |||||||||||| | |||||||| |||||| || || ||||| ||  |||    
T  9344249 ttcaactcaaatcatcgtcaaaatcaatcctaatacataattttcgttt-cttttggcacat-cattcattaa-aatattatttgtccatttattttgtt 9344345  T
Q  531 ttgtgcct 538  Q
    ||||||||    
T  9344346 ttgtgcct 9344353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 12638793 - 12638830
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  12638793 agggcatggttgtccatgacacaagtgcttcaattcaa 12638830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 21302654 - 21302617
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  21302654 agggcatggttgtccatgacacaagtgcttcaattcaa 21302617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 431 - 541
Target Start/End: Original strand, 11475790 - 11475900
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||  |||    
T  11475790 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatttttagttcatttcttaagtt 11475889  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  11475890 ttgtgccttta 11475900  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 34454924 - 34454961
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34454924 agggcataattgtccatgacacaagtgcttcaattcaa 34454961  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 538
Target Start/End: Original strand, 34455906 - 34455994
Alignment:
Q  450 aaaataaatcccaatacataatttttat-ttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcct 538  Q
    ||||| |||||||||| |||||||| || ||||||||| |||||| ||||||| |||||||||| |||  |||||||  |||||||||||    
T  34455906 aaaattaatcccaatatataattttcatgttccttttg-cacatcatttcattcacaatattttcagtctatttcttatgttttgtgcct 34455994  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 11474846 - 11474883
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  11474846 agggcatggttgtccatgacacaagtgcttcaattcaa 11474883  T

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Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 431 - 541
Target Start/End: Original strand, 37260555 - 37260665
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| ||||||||| |||||||||||||||||||||||| |||    
T  37260555 ttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattgacaatatttttagttcatttcttgtgtt 37260654  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  37260655 ttgtgccttta 37260665  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 435
Target Start/End: Original strand, 37259621 - 37259649
Alignment:
Q  407 ttgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||||||||||||||||||||||||    
T  37259621 ttgtccatgacacaagtgcttcaattcaa 37259649  T

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Target: scaffold0671 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 431 - 541
Target Start/End: Original strand, 2272 - 2382
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||  |||| |||||||||| | |||||||||||||||||||||||||||||||| |||    
T  2272 ttcaactcaaatcattgtcaaaattaatcccaatacatgattttcgtttctttttggcacaccttttcattaacaatatttttagttcatttcttgtgtt 2371  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  2372 ttgtgccttta 2382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 435
Target Start/End: Original strand, 1227 - 1255
Alignment:
Q  407 ttgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||||||||||||||||||||||||    
T  1227 ttgtccatgacacaagtgcttcaattcaa 1255  T

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Target: scaffold0065 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 33707 - 33597
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||||||||||| ||||  ||||||||| |||||||||  ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||    
T  33707 ttcaactcaaatcattgtcaaaaataatcccaatgcataattttcgtttccttttggcacaccctttcattaacaataattttagttcatttcttgtgtt 33608  T
Q  531 ttgtgccttta 541  Q
    |||||||||||    
T  33607 ttgtgccttta 33597  T

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Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 431 - 541
Target Start/End: Complemental strand, 22821224 - 22821114
Alignment:
Q  431 ttcaactcaaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgtt 530  Q
    |||||||||| ||||||  ||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  22821224 ttcaactcaattcattgccaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatttttagttcatttcttgtgtt 22821125  T
Q  531 ttgtgccttta 541  Q
    |||| ||||||    
T  22821124 ttgtaccttta 22821114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 22825904 - 22825867
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  22825904 agggcatggttgtccatgacacaagtgcttcaattcaa 22825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 438 - 541
Target Start/End: Original strand, 127181 - 127284
Alignment:
Q  438 caaatcattgttaaaataaatcccaatacataatttttatttccttttggcacatcctttcattaacaatatttttagttcatttcttgcgttttgtgcc 537  Q
    ||||||||||| ||||| |||||||||||||||||||  |||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||     
T  127181 caaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct 127280  T
Q  538 ttta 541  Q
    ||||    
T  127281 ttta 127284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 41 - 4
Alignment:
Q  398 agggcataattgtccatgacacaagtgcttcaattcaa 435  Q
    |||||||  |||||||||||||||||||||||||||||    
T  41 agggcatggttgtccatgacacaagtgcttcaattcaa 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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