View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10587_high_12 (Length: 238)

Name: NF10587_high_12
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10587_high_12
NF10587_high_12
[»] chr2 (5 HSPs)
chr2 (1-212)||(40904617-40904828)
chr2 (1-118)||(18696805-18696922)
chr2 (1-118)||(9428977-9429094)
chr2 (57-99)||(5539948-5539990)
chr2 (3-98)||(34352569-34352663)
[»] chr5 (7 HSPs)
chr5 (1-221)||(32963895-32964115)
chr5 (111-200)||(27193636-27193724)
chr5 (1-103)||(24518428-24518530)
chr5 (1-100)||(6022498-6022597)
chr5 (1-85)||(3278168-3278252)
chr5 (21-78)||(43437414-43437471)
chr5 (1-117)||(40881013-40881129)
[»] chr8 (5 HSPs)
chr8 (1-213)||(32096525-32096737)
chr8 (1-118)||(31136059-31136176)
chr8 (36-103)||(25110165-25110232)
chr8 (36-160)||(44209939-44210062)
chr8 (21-100)||(9991282-9991361)
[»] chr4 (6 HSPs)
chr4 (1-215)||(7704434-7704647)
chr4 (51-194)||(8716136-8716281)
chr4 (1-103)||(12725894-12725996)
chr4 (1-116)||(25317592-25317707)
chr4 (27-105)||(41482032-41482110)
chr4 (56-100)||(27552496-27552540)
[»] chr7 (4 HSPs)
chr7 (1-215)||(21375522-21375737)
chr7 (1-43)||(23761482-23761524)
chr7 (17-116)||(13807866-13807965)
chr7 (21-100)||(31395406-31395485)
[»] chr3 (4 HSPs)
chr3 (1-212)||(53223010-53223223)
chr3 (1-116)||(24172314-24172429)
chr3 (21-118)||(36730485-36730582)
chr3 (22-100)||(12949712-12949790)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-118)||(23059-23176)
[»] chr1 (4 HSPs)
chr1 (1-215)||(3861440-3861653)
chr1 (1-103)||(32302767-32302869)
chr1 (27-117)||(41159497-41159587)
chr1 (56-100)||(22228691-22228735)
[»] chr6 (2 HSPs)
chr6 (1-77)||(12148264-12148340)
chr6 (1-117)||(32160165-32160281)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 40904617 - 40904828
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  40904617 aaaaggttaaactgacttcttttttatggctgaaatcaaaacatgcaattttttcttatagttatcatgactggtggaagcaaccgcttctctgtatggg 40904716  T
Q  101 cgttcggttgtaatttttgtttctgttgtgttgttttggaggtgctttgttctaattagcacctgattttgtgtacatactcttgtgtgtttcccttttg 200  Q
    | |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||| ||    
T  40904717 cattcgcttgtaatttttgtttatgttgtgttgtttttgaggtgctttgttctaattagcacctaattttttgtatataatcttgtgtgtttcccttgtg 40904816  T
Q  201 tacgccttgtgc 212  Q
    ||||||||||||    
T  40904817 tacgccttgtgc 40904828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 18696922 - 18696805
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||| |  || |||||||||||||||||||||||||  ||||||  ||| | ||||||||| ||||||||  | |||||||||||||||||    
T  18696922 aaaaggttaaactaaactcttttttatggctgaaatcaaaacatgtgacttttatttacacttatcatgattggtggaaaaacccgcttctttgtatggg 18696823  T
Q  101 cgttcggttgtaattttt 118  Q
     || |  |||||||||||    
T  18696822 tgtccacttgtaattttt 18696805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 9428977 - 9429094
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    |||| |||||||| | ||| || |||||||||||||||| ||||||| |||||   |||| |||||||||| ||||||| || || |||| |||||||||    
T  9428977 aaaaagttaaactaaattctttcttatggctgaaatcaacacatgcatcttttcgctatagttatcatgacgggtggaaacatccacttccttgtatggg 9429076  T
Q  101 cgttcggttgtaattttt 118  Q
     |||| | ||||| ||||    
T  9429077 agttcaggtgtaactttt 9429094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 5539948 - 5539990
Alignment:
Q  57 tataattatcatgactggtggaagcaaccgcttctttgtatgg 99  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  5539948 tataattatcatgactggtggaaacatccgcttctttgtatgg 5539990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 34352663 - 34352569
Alignment:
Q  3 aaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatg 98  Q
    ||||||||||| | ||| || |||||||||||| |||||||||  || |||   |||| ||||||||| | ||||||||| |||||||||||||||    
T  34352663 aaggttaaactcaattctttcttatggctgaaagcaaaacatgtgacatttagctatagttatcatga-ttgtggaagcatccgcttctttgtatg 34352569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32963895 - 32964115
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||| |||| || ||||||||||||||||||||||| ||||| ||||| || |||||||||||||| ||||| ||||||||||| ||||||||    
T  32963895 aaaaggttaaattgacatcttttttatggctgaaatcaaaacaggcaacattttcctacaattatcatgactgctggaaacaaccgcttctctgtatggg 32963994  T
Q  101 cgttcggttgtaatttttgtttctgttgtgttgttttggaggtgctttgttctaattagcacctgattttgtgtacatactcttgtgtgtttcccttttg 200  Q
    |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||    
T  32963995 cgttcacttgtaatttttgtttatgttgtgttgttttggaggtgctttgttctaattagcacctaattttttgtatatactcttgtgtgtttcccttttg 32964094  T
Q  201 tacgccttgtgcgggaggaaa 221  Q
    ||||||||||||||| |||||    
T  32964095 tacgccttgtgcggggggaaa 32964115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 27193724 - 27193636
Alignment:
Q  111 taatttttgtttctgttgtgttgttttggaggtgctttgttctaattagcacctgattttgtgtacatactcttgtgtgtttcccttttg 200  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||| ||||||| || |||||||    
T  27193724 taatttttgtttttgttgtgttgttttggaggtgctttgctctaattagcacctaatttt-tgtatatacttttgtgtggtttccttttg 27193636  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 24518530 - 24518428
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||| ||||| |||| || ||||||||| | || ||||||||  |||||||| ||||||  |||||||||||||||||||||||||| |||||||||||    
T  24518530 aaaagtttaaaatgacatcttttttatggttaaagtcaaaacagacaacttttacttatagctatcatgactggtggaagcaaccgctcctttgtatggg 24518431  T
Q  101 cgt 103  Q
    |||    
T  24518430 cgt 24518428  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6022597 - 6022498
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    |||||||||||||||| || ||||  ||| | ||||| ||||| |||||||||   || || |||||||||||||||| |||||| ||||||||||||||    
T  6022597 aaaaggttaaactgacatctttttcttggttaaaatccaaacaggcaacttttatctacaactatcatgactggtggaggcaaccacttctttgtatggg 6022498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 3278252 - 3278168
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaacc 85  Q
    |||||||||||||||| || ||||||||| | || | ||||||| ||||||||   ||||  ||||||||| |||||||||||||    
T  3278252 aaaaggttaaactgacatcttttttatggttaaagttaaaacatacaacttttatgtatagctatcatgaccggtggaagcaacc 3278168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 43437471 - 43437414
Alignment:
Q  21 tttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtgga 78  Q
    ||||||||||||||| |||| || ||||| |||| ||||| ||||||||| |||||||    
T  43437471 tttttatggctgaaaacaaatcaagcaacattttattatagttatcatgattggtgga 43437414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 40881129 - 40881013
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    |||||||||| ||||| || ||||||||| | ||||||||  | || ||||||   ||||  |||||||||||||||  | ||||||| | |||||||||    
T  40881129 aaaaggttaagctgacatcttttttatggttaaaatcaaactaggcgacttttatgtatagctatcatgactggtggttgaaaccgctccattgtatggg 40881030  T
Q  101 cgttcggttgtaatttt 117  Q
    ||| |  ||||||||||    
T  40881029 cgtccacttgtaatttt 40881013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 32096525 - 32096737
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| ||||| |     
T  32096525 aaaaggttaaactgacttcttttttatggttgaaatcaaaacatgcaactttttcttatagttatcatgaccggtggaagcagccgcttctctgtataga 32096624  T
Q  101 cgttcggttgtaatttttgtttctgttgtgttgttttggaggtgctttgttctaattagcacctgattttgtgtacatactcttgtgtgtttcccttttg 200  Q
     ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||||    
T  32096625 tgttcgcttgtaatttttatttctgttgtgttgttttggaggtgctttgttctaattagcacctaattttttgtatatactcttgtgtatttcccttttg 32096724  T
Q  201 tacgccttgtgcg 213  Q
    |||| ||||||||    
T  32096725 tacgtcttgtgcg 32096737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 31136176 - 31136059
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||| |  || ||||||||||||||||||||||| |  ||||||  ||| | ||||||||| ||||||||  | |||||||||||||||||    
T  31136176 aaaaggttaaactaaactcttttttatggctgaaatcaaaacaggtgacttttagttacagttatcatgattggtggaaaaacccgcttctttgtatggg 31136077  T
Q  101 cgttcggttgtaattttt 118  Q
     || || |||||||||||    
T  31136076 tgtccgcttgtaattttt 31136059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 25110165 - 25110232
Alignment:
Q  36 tcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatgggcgt 103  Q
    |||||||| |||||| || | || || |||||||||||||||||||||||||| ||||||||||||||    
T  25110165 tcaaaacaggcaactattacgtacaactatcatgactggtggaagcaaccgctcctttgtatgggcgt 25110232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 44210062 - 44209939
Alignment:
Q  36 tcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatgggcgttcggttgtaatttttgtttctgttgtgttgtt 135  Q
    ||||||||| |||||||| | || |  |||||||||||||| || ||||||||| ||||||||| ||| |  ||||||||||| | |||||| ||||| |    
T  44210062 tcaaaacatacaacttttacatacagctatcatgactggtgaaaccaaccgcttgtttgtatggacgtccacttgtaattttt-tatctgttttgttgct 44209964  T
Q  136 ttggaggtgctttgttctaattagc 160  Q
    |||  | ||||||||| | ||||||    
T  44209963 ttgttgctgctttgttttgattagc 44209939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 9991282 - 9991361
Alignment:
Q  21 tttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||| |||||||||| || || || |||  ||| || |||||||| |||||||| || |||||||||||||||||    
T  9991282 tttttatggttgaaatcaaagcaggcgacatttagttacaactatcatgattggtggaaacacccgcttctttgtatggg 9991361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7704647 - 7704434
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||  |||  ||||| ||||||||    
T  7704647 aaaaggttaaactgacttcttttttatggttgaaatcaaaacatgcatctttttcttatagttatcatgactgatggaaaaaact-cttctctgtatggg 7704549  T
Q  101 cgttcggttgtaatttttgtttctgttgtgttgttttggaggtgctttgttctaattagcacctgattttgtgtacatactcttgtgtgtttcccttttg 200  Q
     ||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||  |||| ||||||||||||||||||||||||    
T  7704548 tgttcgcttgtaatttttgtttatgttgtgttgttttgaaggtgctttgttctaattagcacctaatttgttgtaaatactcttgtgtgtttcccttttg 7704449  T
Q  201 tacgccttgtgcggg 215  Q
    ||||| |||||||||    
T  7704448 tacgcattgtgcggg 7704434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 8716281 - 8716136
Alignment:
Q  51 ttttcttataattatcatgactggtggaagcaaccgcttctttgtatgggcgttcggttgtaat-ttttgtttctgttgtgttgttttggaggtgctttg 149  Q
    |||||||| ||||||||||||| || ||||||||||||||| ||||||| |||||  ||||||| |||||||| |||||||||||||||||||| |||||    
T  8716281 ttttcttacaattatcatgactagtagaagcaaccgcttctctgtatggacgttcatttgtaattttttgtttatgttgtgttgttttggaggtactttg 8716182  T
Q  150 ttctaattagcacctga-ttttgtgtacatactcttgtgtgtttcc 194  Q
     ||||||||| |||| | |||||| || ||||||||||||| ||||    
T  8716181 ctctaattagtacctaatttttgtatatatactcttgtgtggttcc 8716136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12725996 - 12725894
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||| |||| || ||||||||| | ||||||||||| |||  |||  ||||||  ||| ||||||||||||||||||| || |||||||||||    
T  12725996 aaaaggttaaaatgacatcttttttatggttaaaatcaaaacaggcagttttcacttatagctataatgactggtggaagcaacccctcctttgtatggg 12725897  T
Q  101 cgt 103  Q
    |||    
T  12725896 cgt 12725894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 25317592 - 25317707
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||| |||| || ||||||||| | || ||||||||  |||| ||| ||| ||  ||||||||||||||||  |||||||| |||||||||||    
T  25317592 aaaaggttaaaatgacatcttttttatggttaaagtcaaaacagacaacctttccttttagctatcatgactggtggacacaaccgctcctttgtatggg 25317691  T
Q  101 cgttcggttgtaattt 116  Q
    ||| |  |||||||||    
T  25317692 cgtccacttgtaattt 25317707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 41482110 - 41482032
Alignment:
Q  27 tggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatgggcgttc 105  Q
    |||||||||||||||||||||| ||||  ||| | ||||||||| |||||||| || || || || |||||||||||||    
T  41482110 tggctgaaatcaaaacatgcaatttttagttacagttatcatgattggtggaaacaccctctcctgtgtatgggcgttc 41482032  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 27552496 - 27552540
Alignment:
Q  56 ttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||||| |||||||| || ||||||| |||||||||    
T  27552496 ttataattatcatgattggtggaaacacccgcttccttgtatggg 27552540  T

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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 21375737 - 21375522
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||||| ||| |||| |  |||||||| |||||||||||||| || ||||| |||||    
T  21375737 aaaaggttaaactgacatcttttttatggctgaaatcaaaacaggcaacatttacttacagctatcatgattggtggaagcaaccactcctttgcatggg 21375638  T
Q  101 cgttcggttgtaat-ttttgtttctgttgtgttgttttggaggtgctttgttctaattagcacctgattttgtgtacatactcttgtgt-gtttcccttt 198  Q
    ||| |  |||||||  ||| | |||||| || |||||||| || |||||| |||  ||||||||| | ||| |||| |||||||||||| ||||||||||    
T  21375637 cgtccacttgtaatcatttttatctgttttgatgttttggtggggctttgctctggttagcacct-agtttttgtaaatactcttgtgtggtttcccttt 21375539  T
Q  199 tgtacgccttgtgcggg 215  Q
    || ||||||||||||||    
T  21375538 tgcacgccttgtgcggg 21375522  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23761524 - 23761482
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaaca 43  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  23761524 aaaaggttaaactgactttttttttatggctgaaatcaaaaca 23761482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 13807965 - 13807866
Alignment:
Q  17 ttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatgggcgttcggttgtaattt 116  Q
    ||||||||||||| |||||||||||||||   | ||  |||||| ||||||||| |||||||| || |   ||||||||||||| ||| | |||||||||    
T  13807965 ttcctttttatggttgaaatcaaaacatgtggcgttcgcttatagttatcatgattggtggaaacacctcattctttgtatgggtgttagtttgtaattt 13807866  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 31395485 - 31395406
Alignment:
Q  21 tttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||||||||||||| || || |||  ||| |  ||||| || |||||||| || |||||||||||||||||    
T  31395485 tttttatggctgaaatcaaaacaggcgacatttagttacagctatcacgattggtggaaacacccgcttctttgtatggg 31395406  T

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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 53223223 - 53223010
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||| || |  |||||||||||||||||||||||  |||| ||| |||| |  ||||||||||||||||||||||||||||||||||||||    
T  53223223 aaaaggttaaactaacatattttttatggctgaaatcaaaacagacaacatttacttacagctatcatgactggtggaagcaaccgcttctttgtatggg 53223124  T
Q  101 cgttcggttgtaat-ttttgtttctgttgtgttgttttggaggtgctttgttctaattagcacctgattttgtgtacatactcttgtgt-gtttcccttt 198  Q
    ||| |  |||||||  ||| |  |||||  ||||||||||  |||||||| ||| ||||||||||  |||| |||| ||| |||||||| ||||||||||    
T  53223123 cgtccacttgtaatcatttttacctgtttcgttgttttggcagtgctttgctctgattagcacctagttttttgtatatattcttgtgtggtttcccttt 53223024  T
Q  199 tgtacgccttgtgc 212  Q
    || ||| |||||||    
T  53223023 tgcacgtcttgtgc 53223010  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 24172314 - 24172429
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||| |||| || ||||||||| | || |||||||||||||||||| ||| ||  ||||||||||||||||  |||||||| ||||||||||     
T  24172314 aaaaggttaaaatgacatcttttttatggttaaagtcaaaacatgcaacttttccttttagctatcatgactggtggacacaaccgctcctttgtatgga 24172413  T
Q  101 cgttcggttgtaattt 116  Q
    ||| |  |||||||||    
T  24172414 cgtccacttgtaattt 24172429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 36730582 - 36730485
Alignment:
Q  21 tttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatgggcgttcggttgtaattttt 118  Q
    ||||||||||||||||||||||| | ||||||   ||| | ||||||||| ||||||||  | | ||||||||||||||| || |  |||||||||||    
T  36730582 tttttatggctgaaatcaaaacaagtaactttcagttacatttatcatgattggtggaaaaacctgcttctttgtatgggtgtccacttgtaattttt 36730485  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 12949790 - 12949712
Alignment:
Q  22 ttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    |||||||| ||||||||||||| || || |||   || || |||||||| |||||||| || |||||||||||||||||    
T  12949790 ttttatggttgaaatcaaaacaggcgacgtttagctacaactatcatgattggtggaaacacccgcttctttgtatggg 12949712  T

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Target: scaffold0092 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 23059 - 23176
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||| |||| || ||||||||| | || ||||||||  |||||||| |||||| ||||||||||  ||||||||||||||| |||||||||||    
T  23059 aaaaggttaaaatgacatcttttttatggttaaagtcaaaacagacaacttttacttatagttatcatgacccgtggaagcaaccgctcctttgtatggg 23158  T
Q  101 cgttcggttgtaattttt 118  Q
    ||| |  |||||||||||    
T  23159 cgtccacttgtaattttt 23176  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3861440 - 3861653
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||  || || ||||| ||||||||||| ||||||||||  ||| |||| || ||||||||||||||||| |||||||| || ||||||||    
T  3861440 aaaaggttaaacaaacatcttttttgtggctgaaatcgaaacatgcaatatttacttacaactatcatgactggtggaatcaaccgctcctctgtatggg 3861539  T
Q  101 cgttcggttgtaat-ttttgtttctgttgtgttgttttggaggtgctttgttctaattagcacctgattttgtgtacatactcttgtgtgtttccctttt 199  Q
     || |  ||||||| |||| | | || | ||||||||||| | |||| || ||||| || |||||  |||  |||||||||||||  ||| ||||| |||    
T  3861540 tgtccacttgtaatcttttttatttgctttgttgttttggcgatgctatgctctaaataacacct--tttattgtacatactctttcgtggttccccttt 3861637  T
Q  200 gtacgccttgtgcggg 215  Q
    | ||||||||||||||    
T  3861638 gcacgccttgtgcggg 3861653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 32302869 - 32302767
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||| |||| || ||||||||| | ||||||||||| |||  |||  ||||||  ||| ||||||||||||||||||| || |||||||||||    
T  32302869 aaaaggttaaaatgacatcttttttatggttaaaatcaaaacaggcagttttcacttatagctataatgactggtggaagcaacccctcctttgtatggg 32302770  T
Q  101 cgt 103  Q
    |||    
T  32302769 cgt 32302767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 41159497 - 41159587
Alignment:
Q  27 tggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatgggcgttcggttgtaatttt 117  Q
    ||||||||||| |||||||  |||||| |||||||||| || || |||||||| || ||  |||||||||||||  | || ||||||||||    
T  41159497 tggctgaaatctaaacatgtgacttttgcttataattaccacgattggtggaaacaccccattctttgtatgggtatccgtttgtaatttt 41159587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 22228735 - 22228691
Alignment:
Q  56 ttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||||||||||||||||| || || | |||||||||    
T  22228735 ttataattatcatgactggtggaagcatccactcccttgtatggg 22228691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12148340 - 12148264
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtgg 77  Q
    ||||||||||||| |  || ||||||||||||||||||||||| || ||||||  ||||| ||||||||| ||||||    
T  12148340 aaaaggttaaactaaactcttttttatggctgaaatcaaaacaagcgacttttagttatagttatcatgattggtgg 12148264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 32160165 - 32160281
Alignment:
Q  1 aaaaggttaaactgacttcctttttatggctgaaatcaaaacatgcaactttttcttataattatcatgactggtggaagcaaccgcttctttgtatggg 100  Q
    ||||||||||||| |  || | |||||||||||||||||||||  ||||||||  |||||  | |||||| || ||||| || ||||| |||||||||||    
T  32160165 aaaaggttaaactaaactcttatttatggctgaaatcaaaacaaacaacttttagttatagatgtcatgattgatggaaacatccgctcctttgtatggg 32160264  T
Q  101 cgttcggttgtaatttt 117  Q
     ||||  ||||||||||    
T  32160265 tgttcatttgtaatttt 32160281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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