View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10587_high_2 (Length: 523)

Name: NF10587_high_2
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10587_high_2
NF10587_high_2
[»] chr4 (52 HSPs)
chr4 (27-513)||(48898272-48898758)
chr4 (385-501)||(49041203-49041319)
chr4 (58-193)||(45366583-45366718)
chr4 (63-221)||(48862827-48862985)
chr4 (79-191)||(48170953-48171065)
chr4 (385-501)||(48863140-48863256)
chr4 (58-191)||(33134190-33134323)
chr4 (97-193)||(48148047-48148143)
chr4 (43-188)||(49044599-49044741)
chr4 (63-191)||(45372424-45372549)
chr4 (54-190)||(48870119-48870252)
chr4 (54-190)||(48885805-48885938)
chr4 (58-193)||(7904613-7904745)
chr4 (449-501)||(48147756-48147808)
chr4 (341-433)||(48852530-48852622)
chr4 (456-503)||(48870539-48870586)
chr4 (456-503)||(48875843-48875890)
chr4 (456-503)||(48886225-48886272)
chr4 (341-435)||(48891279-48891373)
chr4 (102-193)||(7907950-7908038)
chr4 (450-507)||(45384901-45384958)
chr4 (79-188)||(48735682-48735791)
chr4 (387-501)||(45372111-45372231)
chr4 (449-509)||(48705390-48705450)
chr4 (453-501)||(48735421-48735469)
chr4 (110-191)||(7822602-7822680)
chr4 (316-367)||(45366400-45366451)
chr4 (81-193)||(7771008-7771117)
chr4 (456-510)||(48170592-48170646)
chr4 (58-193)||(7774194-7774326)
chr4 (456-513)||(48852663-48852720)
chr4 (58-192)||(7238086-7238217)
chr4 (340-435)||(48170694-48170789)
chr4 (385-427)||(48870453-48870495)
chr4 (385-427)||(48886139-48886181)
chr4 (385-434)||(48875757-48875806)
chr4 (97-157)||(48156825-48156885)
chr4 (460-508)||(49044219-49044267)
chr4 (457-512)||(7773845-7773900)
chr4 (110-191)||(7800270-7800348)
chr4 (110-191)||(7813113-7813191)
chr4 (382-433)||(33133930-33133981)
chr4 (450-509)||(45366237-45366296)
chr4 (387-434)||(49044311-49044358)
chr4 (388-427)||(50672412-50672451)
chr4 (459-512)||(7908325-7908378)
chr4 (58-191)||(33133618-33133751)
chr4 (385-434)||(48147832-48147881)
chr4 (456-501)||(48156460-48156505)
chr4 (116-160)||(49048994-49049038)
chr4 (456-512)||(50250809-50250865)
chr4 (69-145)||(50668635-50668711)
[»] chr5 (7 HSPs)
chr5 (385-501)||(42562379-42562495)
chr5 (450-513)||(29696197-29696260)
chr5 (68-193)||(29687642-29687764)
chr5 (108-193)||(178650-178735)
chr5 (450-499)||(179025-179074)
chr5 (97-181)||(42562705-42562789)
chr5 (387-424)||(29688024-29688061)
[»] chr8 (11 HSPs)
chr8 (449-513)||(15348846-15348910)
chr8 (63-191)||(4032283-4032408)
chr8 (97-191)||(15348482-15348573)
chr8 (61-181)||(12199891-12200008)
chr8 (61-181)||(12444319-12444436)
chr8 (387-435)||(4032024-4032072)
chr8 (450-508)||(4031933-4031991)
chr8 (58-185)||(12194882-12195006)
chr8 (456-509)||(12200304-12200357)
chr8 (58-185)||(12439310-12439434)
chr8 (456-509)||(12444732-12444785)
[»] chr1 (3 HSPs)
chr1 (385-501)||(24367073-24367189)
chr1 (388-513)||(24310097-24310225)
chr1 (108-191)||(24340045-24340125)
[»] chr6 (3 HSPs)
chr6 (336-437)||(21015668-21015769)
chr6 (115-188)||(21980014-21980084)
chr6 (43-188)||(21015342-21015484)
[»] chr3 (6 HSPs)
chr3 (462-509)||(47451938-47451985)
chr3 (58-158)||(11006359-11006459)
chr3 (456-512)||(11015544-11015600)
chr3 (388-427)||(47452029-47452068)
chr3 (456-513)||(11005980-11006037)
chr3 (456-513)||(11024555-11024612)
[»] scaffold0508 (1 HSPs)
scaffold0508 (108-193)||(11893-11975)
[»] chr7 (2 HSPs)
chr7 (387-425)||(30120435-30120473)
chr7 (456-513)||(48883798-48883855)


Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 27 - 513
Target Start/End: Original strand, 48898272 - 48898758
Alignment:
Q  27 cgcttaaagaagaggaagaagaatccaccgcatcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagt 126  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48898272 cgcttaaagaaaaggaagaagaatccaccgcatcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagt 48898371  T
Q  127 gtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaactgcatgccgcaacacaagcacatagaattgcgat 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898372 gtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaactgcatgccgcaacacaagcacatagaattgcgat 48898471  T
Q  227 caattcaaattccgttcctgaaattagatctattgatttagaatcatcatttatcgatgattctgcttatgcaaaccatacttttttgccttattctgat 326  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48898472 caattcaaattcagttcctgaaattagatctattgatttagaatcatcatttatcgatgattctgcttatgcaaatcatacttttttgccttattctgat 48898571  T
Q  327 cttcaactcaaatgttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctt 426  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898572 cttgaactcaaatgttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctt 48898671  T
Q  427 tatctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 513  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  48898672 tgtctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacagatgattacttagtggttttattgtcctatg 48898758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 49041319 - 49041203
Alignment:
Q  385 acctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 484  Q
    |||||||||| |||||||||||||||||||||| |||||||||  |||||||||||  ||  ||| |||||||||||||||||||||||| || ||||||    
T  49041319 acctatggaacccatccaccggagctcacaaactaatacctttgcctcctaatcatgattacttaaatttctatggttttgggtatgatccgtcaacaga 49041220  T
Q  485 tgattacttggtggttt 501  Q
    |||||||||| ||||||    
T  49041219 tgattacttgatggttt 49041203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 58 - 193
Target Start/End: Complemental strand, 45366718 - 45366583
Alignment:
Q  58 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    ||||||||||||||||| | || ||||| || || ||  |||| ||||| ||||||| |||||||||||| |||||||||| |||||| || ||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  158 tcatgatgcccactttgcaaattcacattttcaact 193  Q
    || |||| | ||||||||||||||||||||||||||    
T  45366618 tcgtgattcacactttgcaaattcacattttcaact 45366583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 48862827 - 48862985
Alignment:
Q  63 cctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatg 162  Q
    |||||||||||| |||| | ||| ||||| ||  |||| ||||| |||||||  |||||||| || ||||| ||||||||||| || |||||||||||||    
T  48862827 cctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatg 48862926  T
Q  163 atgcccactttgcaaattcacattttcaactgcatgccgcaacacaagcacatagaatt 221  Q
    || | ||||||||||||||||||||||||||   ||||||||||||  | |||||||||    
T  48862927 atcctcactttgcaaattcacattttcaacttactgccgcaacacacacccatagaatt 48862985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 48171065 - 48170953
Alignment:
Q  79 ttcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaa 178  Q
    ||||||||||||||||  || | ||||| ||||||  ||||||||| ||||||||||||||||||||  | ||||||||||||||| | |||||||||||    
T  48171065 ttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaa 48170966  T
Q  179 ttcacattttcaa 191  Q
    ||| |||||||||    
T  48170965 ttcgcattttcaa 48170953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 385 - 501
Target Start/End: Original strand, 48863140 - 48863256
Alignment:
Q  385 acctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 484  Q
    |||||||||||||||||||||||||||| |||||||||||||   |||||||| ||| || |||| |||||   |||||||||||||||| || |  |||    
T  48863140 acctatggaatccatccaccggagctcagaaacaaataccttcgcctcctaatgattattatttaaatttcgccggttttgggtatgatccgtcagaaga 48863239  T
Q  485 tgattacttggtggttt 501  Q
    |||||||||||||||||    
T  48863240 tgattacttggtggttt 48863256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 33134323 - 33134190
Alignment:
Q  58 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    |||| |||||||||||| |||| |  |||||| ||||  |||| ||||| |||||||  |||||||| || ||||||||| |||| || || ||||||||    
T  33134323 atctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctc 33134224  T
Q  158 tcatgatgcccactttgcaaattcacattttcaa 191  Q
    | ||||| | ||||||||||||||||||||||||    
T  33134223 taatgatcctcactttgcaaattcacattttcaa 33134190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 48148143 - 48148047
Alignment:
Q  97 tacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaact 193  Q
    |||| ||||| |||||||  |||||||| ||||| |||||||||||||| || ||||||||||||||| | ||||| ||||||||||||||| ||||    
T  48148143 taccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctcatgatcctcacttcgcaaattcacattttgaact 48148047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 49044741 - 49044599
Alignment:
Q  43 agaagaatccaccgcatcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttg 142  Q
    |||||||||||||| |||| |||||||| ||| |||| |  |||||||||||  | || ||||  ||||||  |||||||||||||||||||||||  ||    
T  49044741 agaagaatccaccgtatctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatg 49044642  T
Q  143 gttctcacttatctctcatgatgcccactttgcaaattcacatttt 188  Q
    ||| || ||||||||||   |  |||||||||||||||||||||||    
T  49044641 gttttctcttatctctc---aaacccactttgcaaattcacatttt 49044599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 45372549 - 45372424
Alignment:
Q  63 cctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatg 162  Q
    |||||||||||| | ||||||||||| || ||  | || ||||| ||||||| ||||||||| |||||||||||||||||||| ||  |||||||   ||    
T  45372549 cctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctc---tg 45372453  T
Q  163 atgcccactttgcaaattcacattttcaa 191  Q
    || | || |||||||||||||||||||||    
T  45372452 atcctcattttgcaaattcacattttcaa 45372424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 48870119 - 48870252
Alignment:
Q  54 ccgcatcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcactta 153  Q
    |||||||| | |||||||||| |  |||||||||||||||| ||||| ||||| |||||||  |||||||| || ||||||||||||||||| |  ||||    
T  48870119 ccgcatctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttctta 48870218  T
Q  154 tctctcatgatgcccactttgcaaattcacattttca 190  Q
    ||||    ||| |||  ||||||||||||||||||||    
T  48870219 tctc---cgatcccctttttgcaaattcacattttca 48870252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 48885805 - 48885938
Alignment:
Q  54 ccgcatcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcactta 153  Q
    |||||||| | |||||||||| |  |||||||||||||||| ||||| ||||| |||||||  |||||||| || ||||||||||||||||| |  ||||    
T  48885805 ccgcatctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttctta 48885904  T
Q  154 tctctcatgatgcccactttgcaaattcacattttca 190  Q
    ||||    ||| |||  ||||||||||||||||||||    
T  48885905 tctc---cgatcccctttttgcaaattcacattttca 48885938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 58 - 193
Target Start/End: Original strand, 7904613 - 7904745
Alignment:
Q  58 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    ||||||||| ||||||| | ||||||||  || || |  | |||||||| ||||||| ||||||||| |||||||||||||  ||||| || ||||||||    
T  7904613 atcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctc 7904712  T
Q  158 tcatgatgcccactttgcaaattcacattttcaact 193  Q
       |||| | ||||||||||||||||||||||||||    
T  7904713 ---tgatcctcactttgcaaattcacattttcaact 7904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 48147808 - 48147756
Alignment:
Q  449 atatttctatggttttgggtatgatcagttaacagatgattacttggtggttt 501  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  48147808 atattactatggttttgggtatgaccagttaacagatgattacttggtggttt 48147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 433
Target Start/End: Original strand, 48852530 - 48852622
Alignment:
Q  341 ttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttatctcc 433  Q
    ||||||||||||||||||| |||||||   ||  ||||| ||  | |||||||||||||||||||||| |||||||||||||||||| |||||    
T  48852530 ttcatgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttcacaaacaaatacctttgtctcc 48852622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 456 - 503
Target Start/End: Original strand, 48870539 - 48870586
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggtttta 503  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  48870539 tatggttttgggtatgatcagttaacagatgattacttagtggtttta 48870586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 456 - 503
Target Start/End: Original strand, 48875843 - 48875890
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggtttta 503  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  48875843 tatggttttgggtatgatcagttagcagatgattacttggtggtttta 48875890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 456 - 503
Target Start/End: Original strand, 48886225 - 48886272
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggtttta 503  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  48886225 tatggttttgggtatgatcagttaacagatgattacttagtggtttta 48886272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 435
Target Start/End: Original strand, 48891279 - 48891373
Alignment:
Q  341 ttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttatctccta 435  Q
    |||||||||||| ||| ||||||||||||||  |||| | ||| |  |||||||||||||||| |||  |||||||||||||||||| |||||||    
T  48891279 ttcatgtagagggtttgtacttttgcatactaactcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctttgtctccta 48891373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 7907950 - 7908038
Alignment:
Q  102 gtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaact 193  Q
    ||||| ||||||||||||||||||| |||| ||||||| ||||| || ||||||||   || | |||| |||||||||||||||||||||||    
T  7907950 gtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctc---tgctccccattttgcaaattcacattttcaact 7908038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 507
Target Start/End: Complemental strand, 45384958 - 45384901
Alignment:
Q  450 tatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgt 507  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||||||||| |||||    
T  45384958 tatttctatggttttgggtatgatcagtcaacaaatgattatttggtggtttcaatgt 45384901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 48735791 - 48735682
Alignment:
Q  79 ttcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaa 178  Q
    |||||||||| |||||  |||| ||||| |||||||  |||||||| |||||||||||||||||||| || ||||||||   |||| |  | ||||||||    
T  48735791 ttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctcctgtgatactgattttgcaaa 48735692  T
Q  179 ttcacatttt 188  Q
    ||||||||||    
T  48735691 ttcacatttt 48735682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 501
Target Start/End: Complemental strand, 45372231 - 45372111
Alignment:
Q  387 ctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttt---tctttatattt---ctatggttttgggtatgatcagttaa 480  Q
    ||||||||||||||||| || | ||| |||||||||||||| ||||||||| ||| |   | ||| ||||    |||||| |||||||||||| ||||||    
T  45372231 ctatggaatccatccactggtgttcagaaacaaatacctttttctcctaattattctcaatatttctattatccctatggatttgggtatgatgagttaa 45372132  T
Q  481 cagatgattacttggtggttt 501  Q
     ||||||||||||||||||||    
T  45372131 gagatgattacttggtggttt 45372111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 48705450 - 48705390
Alignment:
Q  449 atatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 509  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||||| |||| |||||||    
T  48705450 atatttccatggttttggatatgatcagtcaacagatgattacttggttgtttcaatgtcc 48705390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 453 - 501
Target Start/End: Complemental strand, 48735469 - 48735421
Alignment:
Q  453 ttctatggttttgggtatgatcagttaacagatgattacttggtggttt 501  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||    
T  48735469 ttctatggttttgggtatgaccatttaacagatgattacttggtggttt 48735421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 7822602 - 7822680
Alignment:
Q  110 tcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaa 191  Q
    ||||| ||||||||||||||||||||| || ||||| || ||||||||   |||| ||||||||||||||||||| ||||||    
T  7822602 tcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc---tgatccccactttgcaaattcacaatttcaa 7822680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 367
Target Start/End: Complemental strand, 45366451 - 45366400
Alignment:
Q  316 cttattctgatcttcaactcaaatgttcatgtagaggctttatacttttgca 367  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  45366451 cttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 45366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 7771008 - 7771117
Alignment:
Q  81 caaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaatt 180  Q
    ||||||||| ||||  | || ||||| ||||||| | ||||||| || ||||||||||||||||| || ||||||||   |||| | ||||||| |||||    
T  7771008 caaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctc---tgatcctcactttgaaaatt 7771104  T
Q  181 cacattttcaact 193  Q
    |||||||||||||    
T  7771105 cacattttcaact 7771117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 456 - 510
Target Start/End: Complemental strand, 48170646 - 48170592
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcct 510  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||    
T  48170646 tatggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcct 48170592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 193
Target Start/End: Complemental strand, 7774326 - 7774194
Alignment:
Q  58 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    ||||||||||||||||| | ||||||||  || || | || || ||||| |||||||  | |||||| ||||||||||||   ||||| || ||||||||    
T  7774326 atcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctc 7774227  T
Q  158 tcatgatgcccactttgcaaattcacattttcaact 193  Q
    |   ||| |||| |||||||||||||||||||||||    
T  7774226 t---gatccccattttgcaaattcacattttcaact 7774194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 48852663 - 48852720
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 513  Q
    ||||||||||||||||| | || ||| |||||||||||||| ||||||||||||||||    
T  48852663 tatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatg 48852720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 7238217 - 7238086
Alignment:
Q  58 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    |||| ||||||||| |  |||| ||||||||| ||||  | || ||||| |||||||   ||||||| |||||||||||||||||||| || ||||||||    
T  7238217 atctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctc 7238118  T
Q  158 tcatgatgcccactttgcaaattcacattttcaac 192  Q
       |||  | |||||||||||||||||||| ||||    
T  7238117 ---tgaccctcactttgcaaattcacatttccaac 7238086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 435
Target Start/End: Complemental strand, 48170789 - 48170694
Alignment:
Q  340 gttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttatctccta 435  Q
    |||| ||||||||||||||| ||||||||  |   |||  | || |||||||||||||||||||| ||| ||| |||||||||||||| |||||||    
T  48170789 gttcctgtagaggctttatatttttgcatcataattcaagtttctacctatggaatccatccacccgagttcataaacaaatacctttgtctccta 48170694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 48870453 - 48870495
Alignment:
Q  385 acctatggaatccatccaccggagctcacaaacaaataccttt 427  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  48870453 acctatggaatccatccaccggatttcacaaacaaataccttt 48870495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 48886139 - 48886181
Alignment:
Q  385 acctatggaatccatccaccggagctcacaaacaaataccttt 427  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  48886139 acctatggaatccatccaccggatttcacaaacaaataccttt 48886181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 48875757 - 48875806
Alignment:
Q  385 acctatggaatccatccaccggagctcacaaacaaatacctttatctcct 434  Q
    |||||||||||||||||||||||  |||||||||||||||| | ||||||    
T  48875757 acctatggaatccatccaccggatttcacaaacaaatacctatgtctcct 48875806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 48156885 - 48156825
Alignment:
Q  97 tacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    |||| ||||| ||||||  |||||||||||| ||||||||||||||||| || ||||||||    
T  48156885 taccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctc 48156825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 508
Target Start/End: Complemental strand, 49044267 - 49044219
Alignment:
Q  460 gttttgggtatgatcagttaacagatgattacttggtggttttaatgtc 508  Q
    ||||||||||||||| || |||||||||||| ||||||||||| |||||    
T  49044267 gttttgggtatgatccgtcaacagatgattatttggtggttttgatgtc 49044219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 7773900 - 7773845
Alignment:
Q  457 atggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctat 512  Q
    |||||||||| ||||| ||| ||| ||||||||||||||||||| || ||||||||    
T  7773900 atggttttggttatgaccaggtaagagatgattacttggtggttgtattgtcctat 7773845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 7800270 - 7800348
Alignment:
Q  110 tcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaa 191  Q
    ||||| ||||||||||||||||||||| || ||||| || ||| ||||   |||| ||| ||||||||||||||| ||||||    
T  7800270 tcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctc---tgatccccgctttgcaaattcacaatttcaa 7800348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 7813113 - 7813191
Alignment:
Q  110 tcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaa 191  Q
    ||||| ||||||||||||||||||||| || ||||| || ||||||||   |||  ||||||||||||| ||||| ||||||    
T  7813113 tcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc---tgaaccccactttgcaaagtcacaatttcaa 7813191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 433
Target Start/End: Complemental strand, 33133981 - 33133930
Alignment:
Q  382 tccacctatggaatccatccaccggagctcacaaacaaatacctttatctcc 433  Q
    |||||||||||||||||| |||| ||| ||| |||||||||||||| |||||    
T  33133981 tccacctatggaatccattcacccgagttcataaacaaatacctttgtctcc 33133930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 509
Target Start/End: Complemental strand, 45366296 - 45366237
Alignment:
Q  450 tatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 509  Q
    ||||||||||||||| ||||||| |  |||||||||||||| ||||| |||| |||||||    
T  45366296 tatttctatggtttttggtatgacccattaacagatgattatttggttgtttcaatgtcc 45366237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 49044358 - 49044311
Alignment:
Q  387 ctatggaatccatccaccggagctcacaaacaaatacctttatctcct 434  Q
    |||||||||||||||||  ||| |||||||||||||||||| ||||||    
T  49044358 ctatggaatccatccactagagttcacaaacaaatacctttgtctcct 49044311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 50672412 - 50672451
Alignment:
Q  388 tatggaatccatccaccggagctcacaaacaaataccttt 427  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaataccttt 50672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 512
Target Start/End: Original strand, 7908325 - 7908378
Alignment:
Q  459 ggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctat 512  Q
    |||||||| ||||| |||| || |||||||||||||||||||| | ||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctat 7908378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 33133618 - 33133751
Alignment:
Q  58 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    |||| |||||||||||| |||| |  |||||||| ||  ||||  |||| |||||||  |||||||| |   ||||||||  |||||| || ||||||||    
T  33133618 atctgcctcatgaattgatcatccttattctgctaaggttaccaatgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttatctc 33133717  T
Q  158 tcatgatgcccactttgcaaattcacattttcaa 191  Q
    | |||||   |||||||||||||| |||||||||    
T  33133718 taatgatcttcactttgcaaattcgcattttcaa 33133751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 48147881 - 48147832
Alignment:
Q  385 acctatggaatccatccaccggagctcacaaacaaatacctttatctcct 434  Q
    |||| ||||||||||||||||||||| ||||  |||||||||| ||||||    
T  48147881 acctgtggaatccatccaccggagctaacaagaaaatacctttgtctcct 48147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 501
Target Start/End: Complemental strand, 48156505 - 48156460
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttt 501  Q
    ||||| |||||||||||||| |||| ||||||||||||||| ||||    
T  48156505 tatggatttgggtatgatcaattaagagatgattacttggtagttt 48156460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 49049038 - 49048994
Alignment:
Q  116 acgtttcaagtgtgtttgtaagtcttggttctcacttatctctca 160  Q
    |||||||||||||||||||||||  ||||| || |||||||||||    
T  49049038 acgtttcaagtgtgtttgtaagttatggttttctcttatctctca 49048994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 50250865 - 50250809
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctat 512  Q
    ||||||||||| ||||| || | |||||||||||| |||||||||| ||| ||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 50250809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 50668635 - 50668711
Alignment:
Q  69 gaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggtt 145  Q
    |||||| ||||||||||| || ||||  | || ||||| | ||||| |||||||||||| |||||||| ||||||||    
T  50668635 gaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggtt 50668711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 385 - 501
Target Start/End: Complemental strand, 42562495 - 42562379
Alignment:
Q  385 acctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 484  Q
    |||||||||||||||||| ||||  |||||||||||||||||| ||||||| | ||| |  |||  |||| |||||||||||||||||||| | |||| |    
T  42562495 acctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgattatatttttaatttatatggttttgggtatgatcactcaacaaa 42562396  T
Q  485 tgattacttggtggttt 501  Q
    |||||| || |||||||    
T  42562395 tgattatttagtggttt 42562379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 29696197 - 29696260
Alignment:
Q  450 tatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 513  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||| ||| |||||||||||    
T  29696197 tatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatg 29696260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 29687642 - 29687764
Alignment:
Q  68 tgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcc 167  Q
    ||||||| |||||||||| || || |   |||| ||||| ||||||| ||| |||||||||||||||||||||||||| || || || ||||   |  |     
T  29687642 tgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctc---aacct 29687738  T
Q  168 cactttgcaaattcacattttcaact 193  Q
    |||||||||||||| |||||||||||    
T  29687739 cactttgcaaattctcattttcaact 29687764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 178650 - 178735
Alignment:
Q  108 tctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaact 193  Q
    |||||||  |||||||| |||||||||||||||||||| || || |||||  ||||| |||| ||||||  ||| |||||||||||    
T  178650 tctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctccaatgatacccattttgcactttcccattttcaact 178735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 179025 - 179074
Alignment:
Q  450 tatttctatggttttgggtatgatcagttaacagatgattacttggtggt 499  Q
    |||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  179025 tatttctatggttttgggtatgaggagtcaacagatgattacttgttggt 179074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 42562789 - 42562705
Alignment:
Q  97 tacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattc 181  Q
    |||| ||||| |||||||  |||||||| || ||||||||||||||||| || || ||||||||| || || | |||||||||||    
T  42562789 taccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctctcataataccgagtttgcaaattc 42562705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Original strand, 29688024 - 29688061
Alignment:
Q  387 ctatggaatccatccaccggagctcacaaacaaatacc 424  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  29688024 ctatggaatccatccaccggagttcacagacaaatacc 29688061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 15348846 - 15348910
Alignment:
Q  449 atatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 513  Q
    |||||||||| |||| |||||||| || |||| ||||||||||||||||||||||||||||||||    
T  15348846 atatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatg 15348910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 4032408 - 4032283
Alignment:
Q  63 cctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatg 162  Q
    |||||||||||| |||| |||||  | ||||| |||||  |||| ||||||| ||||||||||||||||||||| ||||||||  | ||||| ||   ||    
T  4032408 cctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatc---tg 4032312  T
Q  163 atgcccactttgcaaattcacattttcaa 191  Q
    || | |||||||||||||| |||||||||    
T  4032311 atcctcactttgcaaattcgcattttcaa 4032283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 15348482 - 15348573
Alignment:
Q  97 tacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaa 191  Q
    |||| ||||| ||||||| ||||||||| || ||||||||||||||||| || |||||||||   ||| |  |||| ||||||||||||||||||    
T  15348482 taccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct---gatccttacttcgcaaattcacattttcaa 15348573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 12199891 - 12200008
Alignment:
Q  61 ttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctca 160  Q
    ||||| |||||||  |||||||||| ||||||||  | || ||||| ||||||  | ||||||| |||||||||||||| ||||| || ||||||||       
T  12199891 ttccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc--- 12199987  T
Q  161 tgatgcccactttgcaaattc 181  Q
    |||| | ||||||||||||||    
T  12199988 tgatcctcactttgcaaattc 12200008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 12444319 - 12444436
Alignment:
Q  61 ttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctca 160  Q
    ||||| |||||||  |||||||||| ||||||||  | || ||||| ||||||  | ||||||| |||||||||||||| ||||| || ||||||||       
T  12444319 ttccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc--- 12444415  T
Q  161 tgatgcccactttgcaaattc 181  Q
    |||| | ||||||||||||||    
T  12444416 tgatcctcactttgcaaattc 12444436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 4032072 - 4032024
Alignment:
Q  387 ctatggaatccatccaccggagctcacaaacaaatacctttatctccta 435  Q
    ||||||||| ||||||  |||| ||||||||||||||||||||||||||    
T  4032072 ctatggaattcatccattggagttcacaaacaaatacctttatctccta 4032024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 508
Target Start/End: Complemental strand, 4031991 - 4031933
Alignment:
Q  450 tatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtc 508  Q
    ||||| ||||||||||||||||| |||| |||| |||| ||| ||||||||| ||||||    
T  4031991 tatttatatggttttgggtatgaccagtcaacaaatgactacctggtggtttcaatgtc 4031933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 12194882 - 12195006
Alignment:
Q  58 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    ||||||||  ||||||  |||||||||| ||||||||  | || ||||| ||||||  | ||||||| ||  |||||||||| ||||| || ||||||||    
T  12194882 atcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctc 12194981  T
Q  158 tcatgatgcccactttgcaaattcacat 185  Q
    |   ||| | ||||||||||||||||||    
T  12194982 t---gatccacactttgcaaattcacat 12195006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 509
Target Start/End: Original strand, 12200304 - 12200357
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 509  Q
    ||||||||||| ||||| | || || |||||||||||||||||||||| |||||    
T  12200304 tatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12200357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 12439310 - 12439434
Alignment:
Q  58 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    ||||||||  ||||||  |||||||||| ||||||||  | || ||||| ||||||  | ||||||| ||  |||||||||| ||||| || ||||||||    
T  12439310 atcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctc 12439409  T
Q  158 tcatgatgcccactttgcaaattcacat 185  Q
    |   ||| | ||||||||||||||||||    
T  12439410 t---gatccacactttgcaaattcacat 12439434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 509
Target Start/End: Original strand, 12444732 - 12444785
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 509  Q
    ||||||||||| ||||| | || || |||||||||||||||||||||| |||||    
T  12444732 tatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12444785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 501
Target Start/End: Original strand, 24367073 - 24367189
Alignment:
Q  385 acctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 484  Q
    |||||||||| ||||||||| ||| ||| |  ||| |||||||  ||| ||||||||| | |  | ||||||||||||||||||||||  ||| ||||||    
T  24367073 acctatggaacccatccaccagagttcataggcaattacctttgcctcttaatcatttatatgcagatttctatggttttgggtatgacaagtcaacaga 24367172  T
Q  485 tgattacttggtggttt 501  Q
    |||||||||||||||||    
T  24367173 tgattacttggtggttt 24367189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 513
Target Start/End: Original strand, 24310097 - 24310225
Alignment:
Q  388 tatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttc---tttatatttctatggttttgggtatgatcagttaacaga 484  Q
    ||||||||||||||||||||| ||| | |||||||||||   |||||    ||| |||   |||| |||||||||||||||| |||||  ||| || |||    
T  24310097 tatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagaga 24310196  T
Q  485 tgattacttggtggttttaatgtcctatg 513  Q
    |||||||||||| |||||| | |||||||    
T  24310197 tgattacttggtagttttagtatcctatg 24310225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 24340045 - 24340125
Alignment:
Q  108 tctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaa 191  Q
    |||||||  |||||||| | |||||||||||| ||||| |||||||||||| || ||   ||||||||||||||||| ||||||    
T  24340045 tctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctgataat---cactttgcaaattcacactttcaa 24340125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 437
Target Start/End: Original strand, 21015668 - 21015769
Alignment:
Q  336 aaatgttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttatctccta 435  Q
    ||||||||||||||||| |||||| |||||||   |   ||| | ||| |||||||||||||||||||  ||| |||||||||||||||||| |||||||    
T  21015668 aaatgttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctccta 21015767  T
Q  436 at 437  Q
    ||    
T  21015768 at 21015769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 21980084 - 21980014
Alignment:
Q  115 cacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacatttt 188  Q
    ||||||||||||||||||||||||||||||| || || |||||||   || || ||||||| ||||||||||||    
T  21980084 cacgtttcaagtgtgtttgtaagtcttggttttctctcatctctc---atcccaactttgcgaattcacatttt 21980014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 21015342 - 21015484
Alignment:
Q  43 agaagaatccaccgcatcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttg 142  Q
    |||||||||||| | |||| ||||| |||||| |||| | |||| || ||||  |||| || |  ||||||  |||||||||||||||||||||||  |     
T  21015342 agaagaatccacagtatctgcctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttatt 21015441  T
Q  143 gttctcacttatctctcatgatgcccactttgcaaattcacatttt 188  Q
    ||| || ||||||||||   |  |||||||||||| ||||||||||    
T  21015442 gttttctcttatctctc---aaacccactttgcaatttcacatttt 21015484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 509
Target Start/End: Complemental strand, 47451985 - 47451938
Alignment:
Q  462 tttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 509  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||    
T  47451985 tttgggtatgacgagttaacagatgattacttagtggttttaatgtcc 47451938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 11006459 - 11006359
Alignment:
Q  58 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaactctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 157  Q
    |||| |||||||||||| |||| |||||  || ||||  | || ||||| || |||| |||||||||||||||||||||||| |||||  | ||||||||    
T  11006459 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 11006360  T
Q  158 t 158  Q
    |    
T  11006359 t 11006359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 11015600 - 11015544
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctat 512  Q
    ||||||||||||||||| || |||| |||||||||||||||||| | | ||||||||    
T  11015600 tatggttttgggtatgaccatttaagagatgattacttggtggtatcagtgtcctat 11015544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Complemental strand, 47452068 - 47452029
Alignment:
Q  388 tatggaatccatccaccggagctcacaaacaaataccttt 427  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  47452068 tatggaatccatccactggagttcacaaacaaataccttt 47452029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 11006037 - 11005980
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 513  Q
    ||||||||||||||||| || | || |||||||||||||||||| | | |||||||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 11005980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 11024612 - 11024555
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 513  Q
    ||||||||||||||||| || | || |||||||||||||||||| | | |||||||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 11024555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 11893 - 11975
Alignment:
Q  108 tctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaact 193  Q
    |||||||  |||||||| |  ||||||||||| ||||| || ||||||||| || ||   ||||||||||||||||||||||||||    
T  11893 tctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataat---cactttgcaaattcacattttcaact 11975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 30120473 - 30120435
Alignment:
Q  387 ctatggaatccatccaccggagctcacaaacaaatacct 425  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  30120473 ctatggaatccatccaccggagtccacaaacaaatacct 30120435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 48883798 - 48883855
Alignment:
Q  456 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 513  Q
    ||||||||||| ||||| | || || |||||||||| ||||||||| |||||||||||    
T  48883798 tatggttttggttatgacccgtcaagagatgattacatggtggtttcaatgtcctatg 48883855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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