View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10587_high_7 (Length: 288)
Name: NF10587_high_7
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 36425905 - 36425629
Alignment:
| Q |
1 |
aaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36425905 |
aaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttc |
36425806 |
T |
|
| Q |
101 |
agaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36425805 |
agaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttatta |
36425706 |
T |
|
| Q |
201 |
aacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacggccatatctcgtttcat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36425705 |
aacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacggccatatctcgtttcat |
36425629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 36411739 - 36411470
Alignment:
| Q |
1 |
aaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36411739 |
aaccaagtaaacaagtacacttaaagctctcaaagttcaaagggtcacaattactgtttggtccacatgttccgtagttagcacattggtctgttggttc |
36411640 |
T |
|
| Q |
101 |
agaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttatta |
200 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |
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|
| T |
36411639 |
agaccagtaccggctccattgactctcttgactgtcccacatgaatgtttgaaagaaaccagattgctgaaccactatccttgtaatgacagacttatta |
36411540 |
T |
|
| Q |
201 |
aacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacggccatatctc |
270 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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|
| T |
36411539 |
aacatgttatatgagagtgatacatagttgtcatcttcaacccaagaaacattacgaactgccatatctc |
36411470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 36417070 - 36416801
Alignment:
| Q |
1 |
aaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36417070 |
aaccaagtaaacaagtacacttaaagctctcaaagttcaaagggtcacaattactgtttggtccacatgttccgtagttagcacattggtctgttggttc |
36416971 |
T |
|
| Q |
101 |
agaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttatta |
200 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |
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|
| T |
36416970 |
agaccagtaccggctccattgactctcttgactgtcccacatgaatgtttgaaagaaaccagattgctgaaccactatccttgtaatgacagacttatta |
36416871 |
T |
|
| Q |
201 |
aacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacggccatatctc |
270 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
36416870 |
aacatgttatatgagagtgatacatagttgtcatcttcaacccaagaaacattacgaactgccatatctc |
36416801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 36369134 - 36368858
Alignment:
| Q |
1 |
aaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| ||| ||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||| |
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|
| T |
36369134 |
aaccaagtaaacaagtgcacttaaagtcttcaaagttaaaaaggtcacaattactgtttgatccacaggttccatagttatcacattggtctgttggttc |
36369035 |
T |
|
| Q |
101 |
agaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttatta |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| |
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|
| T |
36369034 |
agaccagtaccggttccattggctcttttgactgtcccacatgaatgtttgaaagaaaccagattgctgaaccgctattctagtaatgacagacttatcg |
36368935 |
T |
|
| Q |
201 |
aacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacggccatatctcgtttcat |
277 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||| |||||||| ||| | || ||||||||||||||| |
|
|
| T |
36368934 |
aacatgttatacgtaagtgctacatagttgtcatcttcaaccaaagaaacattaaaagtggtcatatctcgtttcat |
36368858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 36387712 - 36387478
Alignment:
| Q |
1 |
aaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||| |||||| ||| | |||||| |
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|
| T |
36387712 |
aaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaattaccatttgatccacatgttccatagttaccacattcgtcagatggttc |
36387613 |
T |
|
| Q |
101 |
agaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttatta |
200 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
36387612 |
agaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaaggaaaccagattgctgaatcactaccctagttatgacagacttagcg |
36387513 |
T |
|
| Q |
201 |
aacatgttatatgagagtgctacatagttgtcatc |
235 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36387512 |
aacatgttatatgagaatgctacatagttatcatc |
36387478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 36373743 - 36373519
Alignment:
| Q |
11 |
acaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtac |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||| |||||| ||||||||| |||||||||||||||| || |
|
|
| T |
36373743 |
acaagtacacttaaagtcctcaaagttcaaagggtcacagttactgtttgatccacaggttccatagttatcacattggtttgttggttcagaccagaac |
36373644 |
T |
|
| Q |
111 |
cggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttat |
210 |
Q |
| |
|
| | ||||||| || |||||| ||| ||| |||||| ||||||||||||||||||||||||| |||| ||||| |||||| |||||| ||||||||||| |
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|
| T |
36373643 |
ctgttccattgacttttttgattgttccaagtgaatatttgaaagaaaccagattgctgaacaactatcctagctatgacagacttatcaaacatgttat |
36373544 |
T |
|
| Q |
211 |
atgagagtgctacatagttgtcatc |
235 |
Q |
| |
|
|||||| |||||||||||| ||||| |
|
|
| T |
36373543 |
atgagattgctacatagttatcatc |
36373519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 36397492 - 36397245
Alignment:
| Q |
1 |
aaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttc |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||| ||||||||| |
|
|
| T |
36397492 |
aaccaagtaaacacgtgcacttaaagttctcaaagttcaaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttc |
36397393 |
T |
|
| Q |
101 |
agaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttatta |
200 |
Q |
| |
|
|||||| ||| | ||||||| ||||||||| ||| ||| |||||| |||||| |||||||||||||||||| |||| ||||| |||||| |||||| | |
|
|
| T |
36397392 |
tgaccagaacctgttccattgactcttttgattgttccaagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatca |
36397293 |
T |
|
| Q |
201 |
aacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaa |
248 |
Q |
| |
|
||||||| ||||| |||||||||||||| || ||||| || |||||| |
|
|
| T |
36397292 |
aacatgtcgtatgaaagtgctacatagttatcttcttccacaaaagaa |
36397245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 36404425 - 36404172
Alignment:
| Q |
1 |
aaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
36404425 |
aaccaagtaaacaagtgcacttaaagtcgtcaaagttaaaagggtcacaattactgtttgatccacatgttccatagttatcacattggtctgttggttc |
36404326 |
T |
|
| Q |
101 |
agaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttatta |
200 |
Q |
| |
|
|| || ||||| ||||||| |||||| | | ||||||||||| ||||||||||||||||||| | ||| ||| ||||| |||||| |||||| | |
|
|
| T |
36404325 |
tgaatagaaccggttccattgattcttttcattcccccacgtgaatatttgaaagaaaccagattgattaacaactttcctagcgatgacagacttatca |
36404226 |
T |
|
| Q |
201 |
aacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgtta |
254 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||| || |||||||||||| |
|
|
| T |
36404225 |
aacatgttatatgagattgctacggagttttcatcttccacaaaagaaacgtta |
36404172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 36433762 - 36433509
Alignment:
| Q |
1 |
aaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttc |
100 |
Q |
| |
|
||||| ||||||||| ||| || |||| | ||||||||| ||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
36433762 |
aaccaggtaaacaagcacatttgaagtccgcaaagttcatagggtcacaattactgtttgatccacatgttccatagttatcacattggtttgttggttg |
36433663 |
T |
|
| Q |
101 |
agaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttatta |
200 |
Q |
| |
|
|| || || || ||||||| || |||| | |||||||| | ||| |||||||||||||||||||||||||||| | |||||||| |||| |||||| | |
|
|
| T |
36433662 |
tgaatagaactggttccattgactttttttattgtcccacattaatatttgaaagaaaccagattgctgaaccaccatcctagtaacgacagacttatca |
36433563 |
T |
|
| Q |
201 |
aacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgtta |
254 |
Q |
| |
|
| ||||||||| | ||||||||||| ||||||||||| ||| ||||||| |||| |
|
|
| T |
36433562 |
accatgttatacgtgagtgctacattgttgtcatcttgaacaaaagaaatgtta |
36433509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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