View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_10 (Length: 353)
Name: NF10587_low_10
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 8028753 - 8029082
Alignment:
| Q |
1 |
ggaccattttgtagcttagaaaagagagcctagaaatatgtggtcctaactcctaaggaacatattctttagnnnnnnnnggaataagtatagcactact |
100 |
Q |
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| T |
8028753 |
ggaccattttgtagcttagaaaagagagcctagaaatctgtggtcctaactcctaaggaacatattctttagaaaagaa-ggaataagtatagcactact |
8028851 |
T |
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| Q |
101 |
ttttaaaataattgtttgattgcaatatgagcataaaatagaggcctagtatggttggtgtgtactaatatgtatcccaattggatggatttgtcaacaa |
200 |
Q |
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| T |
8028852 |
ttttaaaataattgtttgattgcaatatgagcataaaatagaggcctagtatggttggtgtgta---atatgtatcccaattggatggatttgtcaacaa |
8028948 |
T |
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| Q |
201 |
agagaatcacatgccattgtattcaacttcattagaaactagggagtaactactcacatgaagataaagatgttgatagttaagaagatattggaaaaaa |
300 |
Q |
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| T |
8028949 |
agagaatcacatgccattgtattcaacttcattagaaactaggtagtagctactcacatgaagataaagatgttgatagttaagaagatattggaaaaaa |
8029048 |
T |
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| Q |
301 |
taaaatggatttgagactcaattgaattgcaacc |
334 |
Q |
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| T |
8029049 |
taaaatggatttgagactcaattgaattgcaacc |
8029082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8030624 - 8030674
Alignment:
| Q |
1 |
ggaccattttgtagcttagaaaa--gagagcctagaaatatgtggtcctaa |
49 |
Q |
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| T |
8030624 |
ggaccattttgtagcttaaaaaaaagagagcctagaaatttgtggtcctaa |
8030674 |
T |
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