View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10587_low_11 (Length: 351)

Name: NF10587_low_11
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10587_low_11
NF10587_low_11
[»] chr5 (11 HSPs)
chr5 (11-288)||(18313169-18313446)
chr5 (145-288)||(7161663-7161816)
chr5 (145-235)||(18593584-18593674)
chr5 (145-235)||(7452930-7453020)
chr5 (152-233)||(698711-698792)
chr5 (152-232)||(5656749-5656829)
chr5 (152-235)||(34378441-34378524)
chr5 (145-232)||(18255099-18255186)
chr5 (182-232)||(29087823-29087873)
chr5 (249-288)||(29087757-29087796)
chr5 (145-185)||(41250854-41250894)
[»] chr7 (24 HSPs)
chr7 (145-284)||(47325534-47325682)
chr7 (145-288)||(44353213-44353366)
chr7 (145-235)||(31971784-31971874)
chr7 (145-288)||(5859932-5860085)
chr7 (145-288)||(25161088-25161240)
chr7 (145-235)||(10244522-10244612)
chr7 (152-235)||(6585228-6585311)
chr7 (145-281)||(33434480-33434626)
chr7 (152-235)||(43482247-43482329)
chr7 (146-235)||(3867457-3867545)
chr7 (152-235)||(3419055-3419136)
chr7 (152-235)||(34391524-34391607)
chr7 (152-235)||(42454390-42454473)
chr7 (147-235)||(11378772-11378859)
chr7 (147-214)||(37795359-37795426)
chr7 (147-214)||(37795687-37795754)
chr7 (145-204)||(40726140-40726199)
chr7 (181-235)||(38306602-38306656)
chr7 (152-214)||(35745488-35745550)
chr7 (159-235)||(3419321-3419395)
chr7 (247-288)||(40726266-40726307)
chr7 (152-235)||(48161697-48161779)
chr7 (146-235)||(41089396-41089482)
chr7 (248-288)||(43482184-43482224)
[»] chr8 (22 HSPs)
chr8 (145-288)||(20138705-20138858)
chr8 (145-284)||(12897925-12898074)
chr8 (145-288)||(31207011-31207164)
chr8 (145-235)||(22773963-22774053)
chr8 (145-284)||(32065934-32066082)
chr8 (152-235)||(35815900-35815983)
chr8 (145-288)||(36631102-36631254)
chr8 (152-235)||(15821033-15821115)
chr8 (152-235)||(16457131-16457214)
chr8 (152-235)||(37986511-37986594)
chr8 (176-288)||(27889125-27889247)
chr8 (176-288)||(27947783-27947905)
chr8 (145-204)||(9659475-9659534)
chr8 (152-235)||(24995051-24995134)
chr8 (146-235)||(35821597-35821685)
chr8 (152-235)||(3584079-3584163)
chr8 (152-232)||(9519851-9519931)
chr8 (152-232)||(13538330-13538410)
chr8 (152-232)||(13686064-13686144)
chr8 (177-235)||(10837918-10837976)
chr8 (145-185)||(34866309-34866349)
chr8 (152-232)||(38577442-38577522)
[»] chr1 (15 HSPs)
chr1 (145-288)||(30685573-30685726)
chr1 (145-235)||(46814114-46814204)
chr1 (145-235)||(6804880-6804969)
chr1 (145-288)||(7002468-7002619)
chr1 (152-232)||(40216162-40216242)
chr1 (152-235)||(24449587-24449669)
chr1 (145-235)||(31584689-31584778)
chr1 (152-234)||(41920800-41920882)
chr1 (152-235)||(27031497-27031580)
chr1 (145-235)||(14320665-14320755)
chr1 (145-233)||(5389077-5389160)
chr1 (145-284)||(24684142-24684290)
chr1 (174-235)||(5459502-5459563)
chr1 (152-235)||(24659272-24659344)
chr1 (248-284)||(5389185-5389221)
[»] chr3 (21 HSPs)
chr3 (145-235)||(2392152-2392242)
chr3 (145-235)||(2393915-2394005)
chr3 (152-288)||(47235977-47236123)
chr3 (145-288)||(45164133-45164285)
chr3 (152-232)||(21343692-21343772)
chr3 (152-280)||(45399086-45399210)
chr3 (145-235)||(19176848-19176938)
chr3 (145-288)||(34475407-34475560)
chr3 (152-235)||(40023225-40023308)
chr3 (152-235)||(50305230-50305313)
chr3 (145-235)||(31483222-31483312)
chr3 (152-235)||(50559986-50560069)
chr3 (174-235)||(30352117-30352178)
chr3 (157-288)||(43012656-43012796)
chr3 (152-235)||(23328004-23328087)
chr3 (145-235)||(4463734-4463824)
chr3 (153-235)||(9583710-9583792)
chr3 (145-235)||(17551299-17551389)
chr3 (147-223)||(37158660-37158735)
chr3 (152-224)||(53248253-53248325)
chr3 (152-235)||(25506726-25506809)
[»] scaffold0172 (2 HSPs)
scaffold0172 (146-235)||(19260-19349)
scaffold0172 (249-288)||(19197-19236)
[»] chr4 (17 HSPs)
chr4 (145-235)||(7703029-7703118)
chr4 (152-288)||(30964716-30964862)
chr4 (145-235)||(35329349-35329439)
chr4 (145-284)||(27555579-27555729)
chr4 (152-235)||(46698435-46698518)
chr4 (152-216)||(30167219-30167283)
chr4 (152-235)||(2826123-2826206)
chr4 (145-235)||(4306047-4306136)
chr4 (152-235)||(35341007-35341092)
chr4 (152-228)||(9750116-9750191)
chr4 (145-235)||(8705789-8705879)
chr4 (161-235)||(20464931-20465005)
chr4 (152-235)||(31050317-31050400)
chr4 (152-284)||(36689461-36689603)
chr4 (184-238)||(49528425-49528479)
chr4 (152-235)||(52868767-52868851)
chr4 (146-235)||(11281375-11281464)
[»] chr2 (22 HSPs)
chr2 (152-235)||(5254595-5254677)
chr2 (152-235)||(14436923-14437006)
chr2 (154-288)||(387455-387599)
chr2 (161-288)||(17116553-17116680)
chr2 (145-288)||(39338510-39338664)
chr2 (145-235)||(10524440-10524529)
chr2 (145-232)||(3745686-3745773)
chr2 (152-235)||(14106179-14106261)
chr2 (152-230)||(43248883-43248961)
chr2 (145-235)||(43816096-43816186)
chr2 (152-232)||(13512495-13512575)
chr2 (145-228)||(7455601-7455683)
chr2 (152-235)||(7874618-7874702)
chr2 (146-222)||(15457817-15457893)
chr2 (152-235)||(41877208-41877291)
chr2 (145-213)||(25280964-25281032)
chr2 (152-235)||(7461018-7461100)
chr2 (152-235)||(14405541-14405623)
chr2 (155-230)||(22888552-22888626)
chr2 (145-211)||(9823695-9823761)
chr2 (249-288)||(22888655-22888694)
chr2 (153-235)||(45311461-45311543)
[»] chr6 (10 HSPs)
chr6 (152-235)||(3117836-3117919)
chr6 (145-235)||(3254299-3254389)
chr6 (145-235)||(15944341-15944431)
chr6 (152-229)||(15132496-15132573)
chr6 (145-235)||(10542173-10542262)
chr6 (247-288)||(14663359-14663400)
chr6 (251-288)||(15944278-15944315)
chr6 (188-235)||(33697789-33697836)
chr6 (251-288)||(3254236-3254273)
chr6 (152-193)||(14663438-14663478)
[»] scaffold0434 (1 HSPs)
scaffold0434 (176-284)||(2353-2471)
[»] scaffold0085 (1 HSPs)
scaffold0085 (152-235)||(48677-48760)
[»] scaffold0343 (1 HSPs)
scaffold0343 (152-232)||(6050-6130)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 18313169 - 18313446
Alignment:
Q  11 cacagaggtgtttgtaaccaaggaatcaaagattacacaaaatcttttggagtaaatcgagataattctccagttttgactatcataccccatacggaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18313169 cacagaggtgtttgtaaccaaggaatcaaagattacacaaaatcttttggagtaaatcgagataattctccagttttgactatcataccccatacggaaa 18313268  T
Q  111 caaaaacaacagaaatatttccaatgnnnnnnnnaatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaat 210  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||| |  | |||||||||||||||||||||| |||||||||||    
T  18313269 caaaaacaacagaaatatttccaatgttttttttaatcggtaaatattattaaacgtcattcctgtaagacgcaaggtatggatgaaacaagatgcaaat 18313368  T
Q  211 ggtgcagcatatagacggtacaccaaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18313369 ggtgccgcatatagacggtacaccaaaaacaccctcggagataaacccaccaaaacacatcaccacctaaaacagact 18313446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 7161663 - 7161816
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca--------- 235  Q
    |||||| ||||||||||||||||| ||| | ||||||||||| |||||| |||||||||| ||||| ||| ||||||||||||||||||||             
T  7161663 aatcggcaaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatatagacggtacaccataatcacct 7161762  T
Q  236 -aaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
     ||| |||||  | | ||||||||||||||||||||||| | ||||||||||||    
T  7161763 aaaaacacccctgaatataaacccaccaaaacacatcactacctaaaacagact 7161816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 18593674 - 18593584
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||||||| |||| |||||  | ||||||| |||||||||||||||||||    
T  18593674 aatcggcaaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacacca 18593584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 7453020 - 7452930
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| |||||||||||||| ||||||  |||||||||||||||||||  ||  ||||| |||||||||| |||||||||||||||||||    
T  7453020 aatcggcaaatattattaaacatcatccatgcaagacgcaaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacacca 7452930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 698792 - 698711
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacac 233  Q
    ||||||||||||||| ||||   |||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||    
T  698792 aaatattattaaacgacatctctgcaagacgtaaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacac 698711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 5656749 - 5656829
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    ||||||||||||||| ||||  |||||||||||||||||| | |||||||||| |||||| ||| ||||||||||||||||    
T  5656749 aaatattattaaacgccatcaccgcaagacgcaaggtatgaacgaaataagatacaaatgatgccgcatatagacggtaca 5656829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 34378524 - 34378441
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||| ||||  |||||||||||||| ||||| || |  |||| |||||||||| |||||||||||||||||||    
T  34378524 aaatattattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcatatagacggtacacca 34378441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 18255099 - 18255186
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    |||||| ||||||| |||||||| |||| || |||| ||| ||||| || |||| ||||| ||||| |||| ||||||||||||||||    
T  18255099 aatcggcaaatattgttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcatatagacggtaca 18255186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 29087873 - 29087823
Alignment:
Q  182 gcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    |||||||||||| |||| ||||| |||||||||| ||||||||||||||||    
T  29087873 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca 29087823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 29087796 - 29087757
Alignment:
Q  249 agataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  29087796 agataaacccaccaaaacacatcagcacctaaaacagact 29087757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 41250854 - 41250894
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaa 185  Q
    |||||| |||||||||||||| |||||||||||| ||||||    
T  41250854 aatcggcaaatattattaaacatcatcctcgcaaaacgcaa 41250894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 47325534 - 47325682
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacaccaaaagcacc- 243  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||||| || ||||     
T  47325534 aatcggcaaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 47325633  T
Q  244 -------ctc-ggagataaacccaccaaaacacatcaccatctaaaaca 284  Q
           ||| | ||||||||||||||||||||||||||| ||||||||    
T  47325634 aaaaacactctgaagataaacccaccaaaacacatcaccacctaaaaca 47325682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 44353213 - 44353366
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||| ||||| |||||||||| ||||||||| ||||||||              
T  44353213 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 44353312  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||| |||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  44353313 aaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagact 44353366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 31971784 - 31971874
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  31971784 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 31971874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 5859932 - 5860085
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca--------- 235  Q
    |||||| ||||||||||||||||||||| ||||||||||| | |||||| |||| ||||| |||||||||| |||||||||||||||||||             
T  5859932 aatcggcaaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 5860031  T
Q  236 -aaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
     ||| |||||    |||||| |||||||||||||||||||| ||||||||||||    
T  5860032 aaaaacacccctaaagataatcccaccaaaacacatcaccacctaaaacagact 5860085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 288
Target Start/End: Complemental strand, 25161240 - 25161088
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||| ||||||||||||||||||||| || ||||   |||||||| | |||| |||||||||||||||| | ||||||||||||||||              
T  25161240 aatcggcaaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacct 25161141  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  25161140 aaaaacaccct-ggagataaacccaccaaaacacatcaccacctaaaacagact 25161088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 10244612 - 10244522
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||  ||||  |||||||||||||||||||| |||| ||||| |||||||||| |||||||||| ||||||||    
T  10244612 aatcggcaaatattattaaactccatctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacacca 10244522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 6585311 - 6585228
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||| |||| ||||| ||||||||||  ||||||||||||||||||    
T  6585311 aaatattattaaacgccatccccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacacca 6585228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 281
Target Start/End: Original strand, 33434480 - 33434626
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||| ||||||||||||||| ||||| ||||| |||||||||||||| |||  ||||| |||||||| | | ||||||||||||||||              
T  33434480 aatcggcaaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacct 33434579  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaa 281  Q
    |||| |||||  ||| ||||||||||||||||||||||||| |||||    
T  33434580 aaaaacacccctggaaataaacccaccaaaacacatcaccacctaaa 33434626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 43482329 - 43482247
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||| || | ||||||||||||||| |||||||||| ||||| |||| ||||| |||||||||||||    
T  43482329 aaatattattaaacgtcatccccgta-gacgcaaggtatggacgaaataagatacaaatagtgctgcatacagacggtacacca 43482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 3867545 - 3867457
Alignment:
Q  146 atcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||| |||||||||||||| |||||| ||||||||| ||||||| || |||| ||||| ||||||||||  ||||||||||||||||||    
T  3867545 atcggcaaatattattaaacttcatcc-cgcaagacgtaaggtattgacgaaacaagatacaaatggtgccacatatagacggtacacca 3867457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 3419055 - 3419136
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||| | ||| ||  |||||||||||||||    
T  3419055 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacacca 3419136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 34391607 - 34391524
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||| |||| |||||| |||||||| |||| ||||| |||||  ||| ||||||||||| |||||||    
T  34391607 aaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacacca 34391524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 42454390 - 42454473
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||| |||||| ||||||||||||| ||| || |||| ||| | |||||||||| |||||||||| ||||||||    
T  42454390 aaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacacca 42454473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 11378772 - 11378859
Alignment:
Q  147 tcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||| ||||||||||||||| || || |||||||||||||||||||| | |||||||| || ||| ||| ||||||| |||||||||||    
T  11378772 tcggcaaatattattaaacgccaaccccgcaagacgcaaggtatggacg-aataagatacagatgatgccgcatataaacggtacacca 11378859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 37795426 - 37795359
Alignment:
Q  147 tcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtg 214  Q
    |||| ||||||||||||||||| ||| | |||||||||||||||||| |||| ||||| |||||||||    
T  37795426 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtg 37795359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 37795754 - 37795687
Alignment:
Q  147 tcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtg 214  Q
    |||| ||||||||||||||||| ||| | |||||||||||||||||| |||| ||||| |||||||||    
T  37795754 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtg 37795687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 40726140 - 40726199
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagat 204  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||||||| |||| |||||    
T  40726140 aatcggcaaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaacaagat 40726199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 38306656 - 38306602
Alignment:
Q  181 cgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  38306656 cgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 38306602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 35745488 - 35745550
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtg 214  Q
    ||||||||||||||||||||  || || |||||||||||||| |||| ||||| |||||||||    
T  35745488 aaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtg 35745550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 3419321 - 3419395
Alignment:
Q  159 attaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||| ||||| |||||||||||||||||||| |||| ||||| |||| | ||| ||  |||||||||||||||    
T  3419321 attaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacacca 3419395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 40726266 - 40726307
Alignment:
Q  247 ggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  40726266 ggagataaacccaccaaaacacattaccacctaaaacagact 40726307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 48161697 - 48161779
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||||||||||  ||||||| |||| |||||| | || || || ||||| |||| |||||||||||| ||||||    
T  48161697 aaatattattaaacgtcatccctgcaagacacaagatatggacg-aacaaaatacaaatagtgccgcatatagacggcacacca 48161779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 41089396 - 41089482
Alignment:
Q  146 atcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||| ||||||||||||| | ||||   |||||||  |||||||||| |||| ||||| ||| |||||| |||||||||||||||||||    
T  41089396 atcggcaaatattattaaatgccatctctgcaagac--aaggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacacca 41089482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 43482224 - 43482184
Alignment:
Q  248 gagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    ||||||||||||| |||||||| ||||| ||||||||||||    
T  43482224 gagataaacccacaaaaacacaacaccacctaaaacagact 43482184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 145 - 288
Target Start/End: Complemental strand, 20138858 - 20138705
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||| ||||| |||||||||| ||||||||| ||||||||              
T  20138858 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 20138759  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||| |||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  20138758 aaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagact 20138705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 12897925 - 12898074
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||| ||||||||||||||||||||| ||||||| ||||| |||||| |||| ||||| |||||||||| ||||||||||||||||||              
T  12897925 aatcggcaaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacct 12898024  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaaca 284  Q
    |||| |||||  | ||||||||||||||||||||||||||| ||||||||    
T  12898025 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 12898074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 31207011 - 31207164
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacaccaaaagcacc- 243  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||| | ||||| ||||||||||| || ||||     
T  31207011 aatcggcaaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacct 31207110  T
Q  244 -------ctc--ggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
           |||  | |||||||| |||||||||||||||||| ||||||||||||    
T  31207111 aaaaacactcctgaagataaactcaccaaaacacatcaccacctaaaacagact 31207164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 22774053 - 22773963
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||  |||| |||||||||| |||||||||||||||||||    
T  22774053 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatatagacggtacacca 22773963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 32065934 - 32066082
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca---------cca 235  Q
    |||||| ||||||||||||||| ||||  ||||||| |||||||||||| |||| ||||| |||||||||| ||||||||||||||||         | |    
T  32065934 aatcggcaaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacataaccaccta 32066033  T
Q  236 aaagcaccctcggagataaacccaccaaaacacatcaccatctaaaaca 284  Q
    ||| |||||  | ||||||||||||||||||||||||||| ||||||||    
T  32066034 aaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 32066082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 35815900 - 35815983
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||| ||||||||||| |||||||||||||| |||| ||||| ||||||||||  ||||||||||||||||||    
T  35815900 aaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacacca 35815983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 288
Target Start/End: Complemental strand, 36631254 - 36631102
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||| ||||||||||| ||| |||||  ||||||||||||||||| | |||| ||||| |||||||||| ||||||||||||||||||              
T  36631254 aatcggaaaatattattatacgccatccctgcaagacgcaaggtatgaa-gaaacaagatacaaatggtgccgcatatagacggtacaccataatcacct 36631156  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||| |||||  | ||||||||||||||||||||||||||| ||||||||||||    
T  36631155 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 36631102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 15821033 - 15821115
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||||||||||| ||||||||||||||||||| | || ||||| |||||||||| |||||||||||||| ||||    
T  15821033 aaatattattaaacgtcatcct-gcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatagacggtatacca 15821115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 16457131 - 16457214
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||||||||||  |||||||| |||||||||| |||| ||||| ||||||||||  ||||||||||||||||||    
T  16457131 aaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacacca 16457214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 37986511 - 37986594
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||| ||||||| |||||||||||||| | ||| |||| ||||| |||||||||| |||||||||||||||||||    
T  37986511 aaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacacca 37986594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 27889247 - 27889125
Alignment:
Q  176 caagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca----------aaagcaccctcggagataaacccaccaaaa 265  Q
    ||||||||||||||| || |||| ||||| |||||||||| |||||||||| ||||||||          ||| |||||  |||||||||||||||||||    
T  27889247 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaa 27889148  T
Q  266 cacatcaccatctaaaacagact 288  Q
    |||||||||| ||||||||||||    
T  27889147 cacatcaccacctaaaacagact 27889125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 27947905 - 27947783
Alignment:
Q  176 caagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca----------aaagcaccctcggagataaacccaccaaaa 265  Q
    ||||||||||||||| || |||| ||||| |||||||||| |||||||||| ||||||||          ||| |||||  |||||||||||||||||||    
T  27947905 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaa 27947806  T
Q  266 cacatcaccatctaaaacagact 288  Q
    |||||||||| ||||||||||||    
T  27947805 cacatcaccacctaaaacagact 27947783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 9659534 - 9659475
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagat 204  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  9659534 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagat 9659475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 24995051 - 24995134
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||| |||| ||||| || ||||||||||||||||| |||| ||||| |||||||||| || ||||||| ||||||||    
T  24995051 aaatattattgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacacca 24995134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 35821685 - 35821597
Alignment:
Q  146 atcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||| ||||||||||||||| ||||  |||||||||||||| ||||| |||| | ||| |||||| ||| |||||||||||||||||||    
T  35821685 atcggcaaatattattaaacgccatctccgcaagacgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacacca 35821597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 3584163 - 3584079
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataa-gatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||| ||||| | |||||||| ||||||| | |||| || ||| |||||||||| |||||||||||||||||||    
T  3584163 aaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacacca 3584079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 9519931 - 9519851
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    ||||||||||||||  |||||   |||||||||||||||||| |||| ||||| |||||||||| |||||||||| |||||    
T  9519931 aaatattattaaacaccatccctacaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtaca 9519851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 13538410 - 13538330
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    ||||||||||||||| ||||  | |||||||||||||||||| |||| || || |||||||| | ||||||||||||||||    
T  13538410 aaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtaca 13538330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 13686064 - 13686144
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    ||||||||||||||| ||||  | |||||||||||||||||| |||| || || |||||||| | ||||||||||||||||    
T  13686064 aaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtaca 13686144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 10837918 - 10837976
Alignment:
Q  177 aagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||| ||| |  ||||||||||||||| |||| |||||||||||||||||||    
T  10837918 aagacgcaaggaatgaacaaaataagatgcaaatcgtgccgcatatagacggtacacca 10837976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 34866309 - 34866349
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaa 185  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  34866309 aatcggcaaatattattaaacgtcatccccgcaagacgcaa 34866349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 38577442 - 38577522
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    |||||||||||||||||||   ||||||| | || ||||| | |||| || || |||||| ||| ||||||||||||||||    
T  38577442 aaatattattaaacgtcatttccgcaagatgtaatgtatgaacgaaacaatatacaaatgatgccgcatatagacggtaca 38577522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 30685573 - 30685726
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||| ||||||||| ||||||||              
T  30685573 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 30685672  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||| |||||  | ||||||||||||||||||||||||||| ||||||||||||    
T  30685673 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagact 30685726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 46814114 - 46814204
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  46814114 aatcagtaaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 46814204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 6804969 - 6804880
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  6804969 aatcggtaaatattattaaacgctatccccgcaagacgcaaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacacca 6804880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 288
Target Start/End: Complemental strand, 7002619 - 7002468
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacaccaaaagcac-- 242  Q
    |||||| ||||||||||||||||||||||||||| | | |||||||||| |||| ||||| |||| ||||| ||||||| ||||||||||| || |||      
T  7002619 aatcggcaaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataaccactt 7002520  T
Q  243 ------cctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
          ||   |||||||||||||||||||||||||||| |||||| |||||    
T  7002519 aaaaaaccctagagataaacccaccaaaacacatcaccacctaaaatagact 7002468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 40216162 - 40216242
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    |||||||||||||||||||||||||||||||| || |||||| |||  ||||| |||||||||| ||||||||||||||||    
T  40216162 aaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatatagacggtaca 40216242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 24449587 - 24449669
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||| ||||| ||||||| |||||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  24449587 aaatattattaaacgccatcc-cgcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacacca 24449669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 31584689 - 31584778
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||| || |||| ||||| |||||||||| ||||||||||| |||||||    
T  31584689 aatcggcaaatattattaaacaccatcctcgcaagacgcaaggtat-gacgaaacaagatacaaatggtgccgcatatagacgatacacca 31584778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 41920882 - 41920800
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc 234  Q
    ||||||||||||||||||||  ||||||||| |||||||||| ||||||| || ||||| |||| ||||||||||||||||||    
T  41920882 aaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacacc 41920800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 27031497 - 27031580
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||||||||||||||||| |||||| | || || ||  ||||||||| ||||||| |||||||||||    
T  27031497 aaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatatatacggtacacca 27031580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 14320755 - 14320665
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||||||||| | ||||| ||||||||||||  |||  | || |||||||||  |||||||||||||||||||    
T  14320755 aatcggcaaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacacca 14320665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 5389077 - 5389160
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacac 233  Q
    |||||| ||||||||||||||| ||||| |     |||||||||||||| |||||||||| |||||||||| |||||||||||| ||||    
T  5389077 aatcggaaaatattattaaacgccatcccc-----acgcaaggtatggacgaaataagatacaaatggtgccgcatatagacggcacac 5389160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 24684142 - 24684290
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||| ||||||||||| | |||||||  |||||| |||||||||| |  ||| ||||| ||||||||||  |||||||||||||||||              
T  24684142 aatcggcaaatattattatatgtcatccctgcaagatgcaaggtatgaac-aaacaagatacaaatggtgccacatatagacggtacaccataatcacct 24684240  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaaca 284  Q
    |||| |||||  | ||||||||||||||||||||||||||| ||||||||    
T  24684241 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 24684290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 5459563 - 5459502
Alignment:
Q  174 cgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||| |||||||||||||| |||  || || |||||||||| |||||||||||||||||||    
T  5459563 cgcaatacgcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacacca 5459502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 24659344 - 24659272
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||| ||||||||||           |||| ||||| |||||||||| |||||||||||||||||||    
T  24659344 aaatattattaaacgtcatccccgcaagacgc-----------gaaacaagatacaaatggtgccgcatatagacggtacacca 24659272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 5389185 - 5389221
Alignment:
Q  248 gagataaacccaccaaaacacatcaccatctaaaaca 284  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  5389185 gagataaaccaaccaaaacacatcaccacctaaaaca 5389221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 2392152 - 2392242
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  2392152 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 2392242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 2393915 - 2394005
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  2393915 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 2394005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 47236123 - 47235977
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc----------aaaagca 241  Q
    ||||||||||||||| |||||  ||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||| |||          |||| ||    
T  47236123 aaatattattaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataaccatctaaaaaca 47236024  T
Q  242 ccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||  ||||||||||||||||||| ||||||||| ||||||||||||    
T  47236023 cccctggagataaacccaccaaaatacatcaccacctaaaacagact 47235977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 288
Target Start/End: Complemental strand, 45164285 - 45164133
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||| |||||||||||||| | |||| ||||||| ||||||||||||  ||| ||||| |||||||||| ||||||||||||||||||              
T  45164285 aatcggcaaatattattaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 45164186  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||| |||||    
T  45164185 aaaaacaccct-ggagataaacccaccaaaacacatcaccacctaaaatagact 45164133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 21343772 - 21343692
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    |||||||||||||||||||||  ||||||| ||||||||||| |||| ||||| |||||||||| ||||||||||||||||    
T  21343772 aaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca 21343692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 45399210 - 45399086
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacaccaaaagcaccctcggaga 251  Q
    ||||||||||||||| ||||  || ||||||| ||||||| | |||| ||||| |||| ||||| ||||||||||||||||||| || ||||     |||    
T  45399210 aaatattattaaacgacatctccgaaagacgcgaggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacc----aaga 45399115  T
Q  252 taaacccaccaaaacacatcaccatctaa 280  Q
    |||||||||||||||||||||||| ||||    
T  45399114 taaacccaccaaaacacatcaccacctaa 45399086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 19176938 - 19176848
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||||||| |  ||||||||||| ||||||| |||| | ||| |||||||||| |||||||||||||||||||    
T  19176938 aatcggcaaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcatatagacggtacacca 19176848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 34475407 - 34475560
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc---------- 234  Q
    |||||| | ||||||||||||||||||| ||||||||||| |||||| | |||| ||||| ||||||||||  ||||||||||||| |||              
T  34475407 aatcggcacatattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataaccacct 34475506  T
Q  235 aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    || | |||||  |||||||||| |||||||||||||||||| ||||||||||||    
T  34475507 aagaacacccctggagataaactcaccaaaacacatcaccacctaaaacagact 34475560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 40023225 - 40023308
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||| |||||| |||||||||||  ||||||| |||| ||||| |||||| ||| |||||||||||||||||||    
T  40023225 aaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacacca 40023308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 50305230 - 50305313
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||| ||| | |||||||||||||||||||| | || ||||| |||||||||  |||||||||||||||||||    
T  50305230 aaatattattaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacacca 50305313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 31483312 - 31483222
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||  ||||| | |||||||||||||||| |  ||| ||||| |||||||||| |||||||||||||||||||    
T  31483312 aatcggcaaatattattaaacaccatccccacaagacgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacacca 31483222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 50560069 - 50559986
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||||||||| ||||||| |||||| |||| ||||| |||| | ||| ||| ||||||||| |||||    
T  50560069 aaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaaagatgccgcacatagacggtgcacca 50559986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 30352117 - 30352178
Alignment:
Q  174 cgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||||||||| |||| ||||| |||||||||| ||||||||| |||||||||    
T  30352117 cgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacacca 30352178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 288
Target Start/End: Complemental strand, 43012796 - 43012656
Alignment:
Q  157 ttattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacaccaaaagcacc--------ctc-- 246  Q
    |||||||| |||||||| ||||||||||||||||| | |||| || || |||||||||| ||||||||||| ||||||| || ||||        |||      
T  43012796 ttattaaatgtcatcct-gcaagacgcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacctaaaaacactcct 43012698  T
Q  247 ggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    | ||| ||||||||||||| ||||||||||||||||||||||    
T  43012697 gaagaaaaacccaccaaaagacatcaccatctaaaacagact 43012656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 23328004 - 23328087
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||||  ||||  |||| |||||||||||||| |||| |||||  ||||||||| ||||||| |||||||||||    
T  23328004 aaatattattaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcatatatacggtacacca 23328087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 4463734 - 4463824
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| |||||||||||||||||| || | |||||||||||  ||||| |||| || |  |||||||||| ||||||||||||| |||||    
T  4463734 aatcggcaaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatatagacggtgcacca 4463824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 9583710 - 9583792
Alignment:
Q  153 aatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||| ||||  || ||||| |||||||| || |||| ||||| |||||||||| ||||||||||| |||||||    
T  9583710 aatattattaaacgccatctccgtaagacacaaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacacca 9583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 17551389 - 17551299
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||| |||||||||||||||||| ||||  |||||| ||| |||||| | |||| || || |||||||||| |||||||||| ||||||||    
T  17551389 aatcagtaaatattattaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacacca 17551299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 37158735 - 37158660
Alignment:
Q  147 tcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatata 223  Q
    |||| ||||||||| ||||| ||||| |||||||||||||||||||| |||| | ||| |||||||||| |||||||    
T  37158735 tcggcaaatattat-aaacgccatccccgcaagacgcaaggtatggacgaaacaggatacaaatggtgccgcatata 37158660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 53248325 - 53248253
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatag 224  Q
    ||||||||||||||||||||| |||||| || ||||||||||  ||| ||||| |||||||||  ||||||||    
T  53248325 aaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatatag 53248253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 25506726 - 25506809
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||| |||||| |||||||| |||| |||  |  ||| || || |||||||||| |||||||||||||||||||    
T  25506726 aaatattattaaacatcatccccgcaagacccaagatataaacaaaacaatatacaaatggtgccgcatatagacggtacacca 25506809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 19349 - 19260
Alignment:
Q  146 atcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  19349 atcggcaaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 19260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 19236 - 19197
Alignment:
Q  249 agataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  19236 agataaacccaccaaaatacatcaccacctaaaacagact 19197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 7703118 - 7703029
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  7703118 aatcggcaaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacacca 7703029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 30964862 - 30964716
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacaccaaaagcacc-------- 243  Q
    ||||||||||||||  |||||  ||||||||||||||||||| |||| ||||| |||||| ||  ||||||||||||||||||| || ||||            
T  30964862 aaatattattaaacaccatccctgcaagacgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacctaaaaaca 30964763  T
Q  244 ctc--ggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||  ||||||||||||||||||||||||||||| ||||||||||||    
T  30964762 ctcctggagataaacccaccaaaacacatcaccacctaaaacagact 30964716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 35329439 - 35329349
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| |||||||| |||||| ||||| ||||||||| |||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  35329439 aatcggcaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacacca 35329349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 27555579 - 27555729
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctc-gcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc--------- 234  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||||| |||| ||||| ||||| |||| ||||||||| ||||||||             
T  27555579 aatcggcaaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacc 27555678  T
Q  235 -aaaagcaccctcggagataaacccaccaaaacacatcaccatctaaaaca 284  Q
     |||| |||||  | ||||||||||||||||||||||||||| ||||||||    
T  27555679 taaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 27555729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 46698435 - 46698518
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||||||||||  | ||||||||||||||||  |||| ||||| |||||||||| |||||||||||||||||||    
T  46698435 aaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacacca 46698518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 30167219 - 30167283
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgca 216  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||    
T  30167219 aaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatgatgca 30167283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 2826206 - 2826123
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||   ||||||||||||||||||| | || ||||| |||||||||| ||||||| |||||||||||    
T  2826206 aaatattattaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatatacggtacacca 2826123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 4306136 - 4306047
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||| ||||||| || ||||||||||||||| | |||| |||||  ||||||||| |||||||||||||||||||    
T  4306136 aatcggcaaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacacca 4306047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 35341007 - 35341092
Alignment:
Q  152 aaatattattaaacgtcatcctc--gcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||| |  ||||||||||| ||||||| |||| ||||| ||||||||||  ||||||||||||||||||    
T  35341007 aaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatatagacggtacacca 35341092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 9750191 - 9750116
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacgg 228  Q
    ||||||||||||||||||||| |||||||||| |||| |||| |||| ||||| |||||||||| ||||||||||||    
T  9750191 aaatattattaaacgtcatccccgcaagacgc-aggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 8705789 - 8705879
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| |||||||||||||||||||||   |||||||| ||||||||| ||   | ||| |||||||||| |||||||||||||||||||    
T  8705789 aatcggcaaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacacca 8705879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 20465005 - 20464931
Alignment:
Q  161 taaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||| ||||| |||||||||| | |||| ||||| |||||||||| | |||||||||||||||||    
T  20465005 taaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacacca 20464931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 31050317 - 31050400
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||| ||| ||||||| || | ||||||| |||| ||||| |||||| ||  |||||||||||||||||||    
T  31050317 aaatattattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcatatagacggtacacca 31050400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 36689461 - 36689603
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacac----------caaaagca 241  Q
    |||||||||||||   ||||  |||||||||| ||||||||| |||||||||| ||||||||   |||||||||||||||||           |||| ||    
T  36689461 aaatattattaaataccatctccgcaagacgcgaggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataaccacttaaaaaca 36689560  T
Q  242 ccctcggagataaacccaccaaaacacatcaccatctaaaaca 284  Q
    |||  | |||||||| |||||||||||||||||||||||||||    
T  36689561 cccctgaagataaactcaccaaaacacatcaccatctaaaaca 36689603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 49528479 - 49528425
Alignment:
Q  184 aaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacaccaaaa 238  Q
    |||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||    
T  49528479 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaa 49528425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 52868767 - 52868851
Alignment:
Q  152 aaatattattaaa-cgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||| ||||||| || ||||||| |||||||| | ||| |||||| |||||||||  || ||||||||||||||||    
T  52868767 aaatattattaaaacgtcatcttcacaagacgtaaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacacca 52868851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 11281375 - 11281464
Alignment:
Q  146 atcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||| |||||||||| |||||||||  | ||||||||||| |||||| |||| | |||  ||||||||| | |||||||||||| ||||    
T  11281375 atcggcaaatattattgaacgtcatctccacaagacgcaagatatggacgaaacatgatataaatggtgctgtatatagacggtatacca 11281464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 5254677 - 5254595
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||| |||||||||||||||||||    
T  5254677 aaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaat-agatacaaatggtgccgcatatagacggtacacca 5254595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 14436923 - 14437006
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  14436923 aaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 14437006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 387599 - 387455
Alignment:
Q  154 atattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc----------aaaagcacc 243  Q
    ||||||||||||||||||  |||||| |||| |||||||| |||| ||||| |||||||||| ||||||||||||||||||          |||| ||||    
T  387599 atattattaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacttaaaaacacc 387500  T
Q  244 ctcggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |  | ||||||||||||||||||||||||||| ||||||||||||    
T  387499 catgaagataaacccaccaaaacacatcaccacctaaaacagact 387455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 17116553 - 17116680
Alignment:
Q  161 taaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacaccaaaagcaccctcggagataaacccac 260  Q
    |||||||||||| |||||||||||||||||||| || | ||||| |||||| ||| ||||||||||||||||| | || |||||  | ||||||| ||||    
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataaccacccctgaagataaatccac 17116652  T
Q  261 caaaacacatcaccatctaaaacagact 288  Q
      ||||||||||||  ||||||||||||    
T  17116653 agaaacacatcaccgcctaaaacagact 17116680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 39338510 - 39338664
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca--------- 235  Q
    |||||| ||||||||||||||| |||| ||| ||||||||| ||||||| |||| ||||| |||||||||| |||||||||||||||||||             
T  39338510 aatcggcaaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 39338609  T
Q  236 -aaagcaccctcggagataaacccaccaaaacacatca-ccatctaaaacagact 288  Q
     ||| |||||  | |||||||||||||||||||||||| ||| ||||||||||||    
T  39338610 gaaaacacccctgaagataaacccaccaaaacacatcacccacctaaaacagact 39338664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 10524529 - 10524440
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||| || ||| ||||||||||||||||||| |||| || || |||||||||||||||||||| |||||||||    
T  10524529 aatcggcaaatattattaaacgccaccct-gcaagacgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacacca 10524440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 3745773 - 3745686
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    |||||| ||||||||||||| ||||||| |  ||||||||||||||||| |||| ||||| |||||||||| ||||||||| ||||||    
T  3745773 aatcggcaaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagatggtaca 3745686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 14106179 - 14106261
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||| ||||||||||||||||| ||||| || |||| |||||  ||||||||| |||||||||||||||||||    
T  14106179 aaatattattaaacgccatcctcgcaagacgcagggtat-gacgaaacaagatagaaatggtgccgcatatagacggtacacca 14106261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 43248883 - 43248961
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggta 230  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||| |||||  |||||| || ||||||||||||||    
T  43248883 aaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacggta 43248961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 43816096 - 43816186
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||||||| | ||||| |||||||||||||| |||| ||  | |||||| ||| |||||||||||||||||||    
T  43816096 aatcggcaaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacacca 43816186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 13512495 - 13512575
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    ||||||||||||||||||| | |||||||||||| ||||||| |||| || || |||||| ||| ||||||||||||||||    
T  13512495 aaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaacaaaatacaaatgatgccgcatatagacggtaca 13512575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 7455683 - 7455601
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacgg 228  Q
    |||| ||||||| ||||||||||||||| |||||||||| ||||||| | |||||||||| |||||||||| ||| ||||||||    
T  7455683 aatcagtaaataatattaaacgtcatccccgcaagacgc-aggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 7874702 - 7874618
Alignment:
Q  152 aaatattattaaa-cgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||| || |||||||||||||| |||||||| ||  ||| ||||| ||||||| || |||||||||||||||||||    
T  7874702 aaatattattaaaacgccatcctcgcaagacacaaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacacca 7874618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 15457893 - 15457817
Alignment:
Q  146 atcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatat 222  Q
    ||||| ||||| ||||||||||||||| ||||||||||| | |||||| |||| ||||| |||||||||| ||||||    
T  15457893 atcggcaaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 41877208 - 41877291
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||  ||||| ||||||||||||| |||||| |||| || || |||||||| | | |||||||||||||||||    
T  41877208 aaatattattaaactccatccccgcaagacgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacacca 41877291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 25280964 - 25281032
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggt 213  Q
    |||||| ||||||||||||||||||||| | ||||||||| |||||||| |||| |||||  |||||||    
T  25280964 aatcggaaaatattattaaacgtcatccccacaagacgcagggtatggacgaaacaagatataaatggt 25281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 7461100 - 7461018
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||||| |||||||||||  |||| || |||| || || |||||||||  |||||||||| ||||||||    
T  7461100 aaatattattaaacgtcatccccgcaagacgcagagtat-gacgaaacaaaatacaaatggtgttgcatatagacagtacacca 7461018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 14405623 - 14405541
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||||| || |  |||||||| |||||||| | |||  ||||| |||||||||| |||||||||||||||||||    
T  14405623 aaatattattaaacgttattcctgcaagacgtaaggtatgaacgaac-aagatacaaatggtgctgcatatagacggtacacca 14405541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 22888552 - 22888626
Alignment:
Q  155 tattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggta 230  Q
    |||||||||| ||||||| |||||||||||| |||||||||||| ||| |  |||||||||  |||||||||||||    
T  22888552 tattattaaatgtcatcc-cgcaagacgcaatgtatggatgaaacaaggtagaaatggtgccacatatagacggta 22888626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 9823761 - 9823695
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatg 211  Q
    |||||| ||||||||||||||| ||||  |||||||| ||||||||| |||||| ||||| ||||||    
T  9823761 aatcggcaaatattattaaacgccatctccgcaagacacaaggtatgaatgaaacaagatacaaatg 9823695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 22888655 - 22888694
Alignment:
Q  249 agataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  22888655 agataaacccaccaaaacgcatcaccacctaaaacagact 22888694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 45311461 - 45311543
Alignment:
Q  153 aatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||||||| || || ||||||| |||||| | ||| |||| ||||| ||||||||||  |||||| |||| ||||||    
T  45311461 aatattattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgccacatatatacggaacacca 45311543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 3117919 - 3117836
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    ||||||||||||||||||| |  |||||||| |||||||||| |||||||||| |||||||||||||||||||||| |||||||    
T  3117919 aaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacacca 3117836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 3254389 - 3254299
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||| | |||||||  ||||||||    
T  3254389 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacacca 3254299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 15944431 - 15944341
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| ||||||||||||||| |||||  | |||||||||||||||||   || ||||| |||||||||  |||||||||||||||||||    
T  15944431 aatcggcaaatattattaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacacca 15944341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 15132496 - 15132573
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggt 229  Q
    ||||||||||||||| |||| |||||||||| ||||||||||  ||| ||||| |||||| ||| | |||||||||||    
T  15132496 aaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacggt 15132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 10542262 - 10542173
Alignment:
Q  145 aatcggtaaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| |||||||||||| || ||||| ||||||| ||||| |||| | |||| ||||| |||| ||||| ||||||||||| |||||||    
T  10542262 aatcggaaaatattattaagcgccatcc-cgcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacacca 10542173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 14663400 - 14663359
Alignment:
Q  247 ggagataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  14663400 ggagataaacccacgaaaacacatcaccacctaaaacagact 14663359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 15944315 - 15944278
Alignment:
Q  251 ataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  15944315 ataaacccaccaaaacacatcaccacctaaaacagact 15944278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 33697789 - 33697836
Alignment:
Q  188 tatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 33697836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 3254273 - 3254236
Alignment:
Q  251 ataaacccaccaaaacacatcaccatctaaaacagact 288  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  3254273 ataaacccaccaaaatacatcaccacctaaaacagact 3254236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 14663478 - 14663438
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatgga 193  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  14663478 aaatattattaaacgtcatcct-gcaagacgaaaggtatgga 14663438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 2353 - 2471
Alignment:
Q  176 caagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacc----------aaaagcaccctcggagataaacccaccaaaa 265  Q
    |||||||||||||||||| |||| ||||| || ||||||| ||||||||||||||||||          |||| |||||| | ||||||||||||||||     
T  2353 caagacgcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacctaaaaacacccttgaagataaacccaccaaac 2452  T
Q  266 cacatcaccatctaaaaca 284  Q
    |||||||||| ||||||||    
T  2453 cacatcaccacctaaaaca 2471  T

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Target: scaffold0085 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 48760 - 48677
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtacacca 235  Q
    |||||||||| |||||| ||| |||||||| |||| ||||||  ||| ||||| |||||||||| |||||||||||||||||||    
T  48760 aaatattattcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacacca 48677  T

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Target: scaffold0343 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 6130 - 6050
Alignment:
Q  152 aaatattattaaacgtcatcctcgcaagacgcaaggtatggatgaaataagatgcaaatggtgcagcatatagacggtaca 232  Q
    ||||||||||||||||||||| ||||||||||||| |||| | || | ||||| |||||||||| | ||||||||| ||||    
T  6130 aaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatatagacgttaca 6050  T

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