View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10587_low_12 (Length: 345)

Name: NF10587_low_12
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10587_low_12
NF10587_low_12
[»] chr4 (5 HSPs)
chr4 (59-300)||(2818751-2818988)
chr4 (75-139)||(23480527-23480591)
chr4 (72-139)||(44454823-44454888)
chr4 (72-119)||(26635919-26635966)
chr4 (72-119)||(56094295-56094342)
[»] chr5 (3 HSPs)
chr5 (71-223)||(5552522-5552674)
chr5 (70-158)||(36958451-36958539)
chr5 (146-213)||(3889689-3889756)
[»] chr1 (3 HSPs)
chr1 (70-162)||(6567891-6567983)
chr1 (69-127)||(27458361-27458419)
chr1 (72-138)||(32893757-32893823)
[»] chr3 (3 HSPs)
chr3 (76-127)||(44108118-44108169)
chr3 (71-127)||(36260896-36260952)
chr3 (70-109)||(53503223-53503262)
[»] chr7 (5 HSPs)
chr7 (70-119)||(22920072-22920121)
chr7 (71-108)||(16960160-16960197)
chr7 (71-127)||(34596012-34596068)
chr7 (74-108)||(37475023-37475057)
chr7 (72-108)||(16941669-16941705)
[»] chr2 (5 HSPs)
chr2 (70-138)||(10019696-10019764)
chr2 (71-119)||(21437063-21437111)
chr2 (70-138)||(35716564-35716632)
chr2 (70-125)||(14201532-14201587)
chr2 (71-127)||(33428875-33428931)
[»] chr8 (1 HSPs)
chr8 (71-127)||(43120734-43120790)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 59 - 300
Target Start/End: Complemental strand, 2818988 - 2818751
Alignment:
Q  59 atgaaaccatctgattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaagttggaaacaagtatgataaaatgtgtgtaa 158  Q
    |||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2818988 atgaaatcatttgattacttgatttataatgttgttcataaaatatttatcggtaaaattaagtttgaagttggaaacaagtatgataaaatgtgtataa 2818889  T
Q  159 gtaaccgtatttggtattatagacactttttagaccggacacctcaatgttaaattataacgtaaacgtttttaacaaaattttgatgaaaaaatcgt-a 257  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |   || ||||||||||||||||| |    
T  2818888 gtaaccgtgtttggtattatagacactttttagaccagacacctcaatgttaaattgtaacgtaaacgttttttaacgaagtttgatgaaaaaatcgtaa 2818789  T
Q  258 gattataaatattttatgactgaatgacccatttgttataaag 300  Q
     |||||||||||||||||||     ||||||||||||||||||    
T  2818788 aattataaatattttatgac-----gacccatttgttataaag 2818751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 23480591 - 23480527
Alignment:
Q  75 acttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaagttggaaacaag 139  Q
    |||||||||||||| |||||||| |||||||| |  ||||||||| ||||||| |||||||||||    
T  23480591 acttgatttataatattgttcatgaaacatttcttagtaaaattacgtttgaatttggaaacaag 23480527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 44454823 - 44454888
Alignment:
Q  72 attacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaagttggaaacaag 139  Q
    ||||||||||||||||||||||| |||||   |||||  ||||||||| ||||||| |||||||||||    
T  44454823 attacttgatttataatgttgttgataaactgtttat--gtaaaattatgtttgaatttggaaacaag 44454888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 26635919 - 26635966
Alignment:
Q  72 attacttgatttataatgttgttcataaaacatttatcggtaaaatta 119  Q
    |||||||||| |||||||||||| |||||| ||||||| |||||||||    
T  26635919 attacttgatctataatgttgttgataaaatatttatctgtaaaatta 26635966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 56094295 - 56094342
Alignment:
Q  72 attacttgatttataatgttgttcataaaacatttatcggtaaaatta 119  Q
    ||||||||||||||||||||||| || ||| ||||||| |||||||||    
T  56094295 attacttgatttataatgttgttgatcaaatatttatctgtaaaatta 56094342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 5552522 - 5552674
Alignment:
Q  71 gattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaagttggaaacaagtatgataaaatgtgtgtaagtaaccgtattt 170  Q
    |||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||| | | ||| ||| | || ||||| | ||||| ||| | | |||    
T  5552522 gattacttaatttataatattgttcattaaacatttatcgttaaaattaagtttgaattagaaaataagaaggagaaaatatttgtaattaatcatgttt 5552621  T
Q  171 ggtattatagacactttttagaccggacacctcaatgttaaattataacgtaa 223  Q
    | | | ||| |||||||||||||  |  |||||||||||||||  ||||||||    
T  5552622 gttgtcataaacactttttagacatgcaacctcaatgttaaatggtaacgtaa 5552674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 36958451 - 36958539
Alignment:
Q  70 tgattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaagttggaaacaagtatgataaaatgtgtgtaa 158  Q
    ||||||||| |||||||| | ||||||| ||||||||||| ||||||||| |||| || |||||| |||| |||| ||||| |||||||    
T  36958451 tgattacttaatttataaagatgttcatgaaacatttatcagtaaaattatgtttaaatttggaagcaagaatgagaaaatatgtgtaa 36958539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 3889756 - 3889689
Alignment:
Q  146 aaaatgtgtgtaagtaaccgtatttggtattatagacactttttagaccggacacctcaatgttaaat 213  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||| | | || |||||| ||||||    
T  3889756 aaaatgtgtgtaagtaatcatatttggtgttataaacactttttagatctgtcatctcaatattaaat 3889689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 6567983 - 6567891
Alignment:
Q  70 tgattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaagttggaaacaagtatgataaaatgtgtgtaagtaa 162  Q
    |||||||||||||| |||||||||| || ||||||||||   ||||||||| |||||| | ||||||||| || | ||||||||| |||||||    
T  6567983 tgattacttgatttgtaatgttgttaattaaacatttatgtctaaaattaaatttgaattcggaaacaagaataagaaaatgtgtctaagtaa 6567891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 27458419 - 27458361
Alignment:
Q  69 ctgattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaa 127  Q
    |||||||||||||||||||| ||||| || ||| ||||||  ||||||||| |||||||    
T  27458419 ctgattacttgatttataatattgttgatcaaatatttatatgtaaaattatgtttgaa 27458361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 32893757 - 32893823
Alignment:
Q  72 attacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaagttggaaacaa 138  Q
    ||||||||| |||||||||||||  | ||| ||||||| ||||||||||| ||||| | ||||||||    
T  32893757 attacttgaattataatgttgttgttgaaatatttatctgtaaaattaagattgaattgggaaacaa 32893823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 44108169 - 44108118
Alignment:
Q  76 cttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaa 127  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  44108169 cttgatttataatgttgttcataaaatatttatgtgtaaaattaagtttgaa 44108118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 36260952 - 36260896
Alignment:
Q  71 gattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaa 127  Q
    |||||||||||||||||| ||||| |  ||| ||||||| |||||||||||||||||    
T  36260952 gattacttgatttataatattgttgaagaaatatttatccgtaaaattaagtttgaa 36260896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 53503262 - 53503223
Alignment:
Q  70 tgattacttgatttataatgttgttcataaaacatttatc 109  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  53503262 tgattacttgatttataatgtcgttcatcaaacatttatc 53503223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 22920121 - 22920072
Alignment:
Q  70 tgattacttgatttataatgttgttcataaaacatttatcggtaaaatta 119  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  22920121 tgattacttgatctataatgttgttcataaaacatttatctataaaatta 22920072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 16960197 - 16960160
Alignment:
Q  71 gattacttgatttataatgttgttcataaaacatttat 108  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  16960197 gattacttgatttataatgttgttcatgaaacatttat 16960160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 34596068 - 34596012
Alignment:
Q  71 gattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaa 127  Q
    |||||||||||||||||||||||| || ||| |||||||  |||||||||| |||||    
T  34596068 gattacttgatttataatgttgttgatcaaatatttatctttaaaattaagcttgaa 34596012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 37475057 - 37475023
Alignment:
Q  74 tacttgatttataatgttgttcataaaacatttat 108  Q
    |||||||||||||||||||||||| ||||||||||    
T  37475057 tacttgatttataatgttgttcatgaaacatttat 37475023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 16941705 - 16941669
Alignment:
Q  72 attacttgatttataatgttgttcataaaacatttat 108  Q
    ||||||||||||||||||||||| || ||||||||||    
T  16941705 attacttgatttataatgttgtttatgaaacatttat 16941669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 10019764 - 10019696
Alignment:
Q  70 tgattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaagttggaaacaa 138  Q
    ||||||||||||||||| ||||| |||| ||| ||||||  ||||||||| ||||||| ||||||||||    
T  10019764 tgattacttgatttatattgttgctcattaaatatttatttgtaaaattaggtttgaatttggaaacaa 10019696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 21437063 - 21437111
Alignment:
Q  71 gattacttgatttataatgttgttcataaaacatttatcggtaaaatta 119  Q
    |||||||||||||||||||||||| || ||| ||||||| |||||||||    
T  21437063 gattacttgatttataatgttgttgatcaaatatttatctgtaaaatta 21437111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 35716564 - 35716632
Alignment:
Q  70 tgattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaagttggaaacaa 138  Q
    ||||||||||||||||| |||||||||  |||||||||||  |||||||  ||||||| | ||||||||    
T  35716564 tgattacttgatttatattgttgttcacgaaacatttatctttaaaattgggtttgaattcggaaacaa 35716632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 14201532 - 14201587
Alignment:
Q  70 tgattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttg 125  Q
    ||||||||||||||||||||||||| |||||| ||||||   |||||||| |||||    
T  14201532 tgattacttgatttataatgttgttgataaaatatttattattaaaattaggtttg 14201587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 33428931 - 33428875
Alignment:
Q  71 gattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaa 127  Q
    ||||| |||||||||||| ||||| |||||| ||||| | ||||||||||| |||||    
T  33428931 gattatttgatttataatattgttgataaaatatttaaccgtaaaattaagcttgaa 33428875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 43120734 - 43120790
Alignment:
Q  71 gattacttgatttataatgttgttcataaaacatttatcggtaaaattaagtttgaa 127  Q
    |||||||||||||||||| ||||| || ||| ||||||  ||||||||| |||||||    
T  43120734 gattacttgatttataatattgttgattaaatatttatatgtaaaattaggtttgaa 43120790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University