View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_13 (Length: 339)
Name: NF10587_low_13
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_13 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 14003585 - 14003254
Alignment:
| Q |
1 |
ccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003585 |
ccaacatttggatcttcaatatgctgattttttgaatgatcattgtgctgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaat |
14003486 |
T |
|
| Q |
101 |
tgtcgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccacca |
200 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003485 |
tgtcgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccacca |
14003386 |
T |
|
| Q |
201 |
tacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtttacaagatcaaaatatcatcatgtttgctgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003385 |
tacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtttacaagatcaaaatatcatcatgtttgctgc |
14003286 |
T |
|
| Q |
301 |
ccttttccccaatctgcagcagcttcatctca |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14003285 |
ccttttccccaatctgcagcagcttcatctca |
14003254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 5767219 - 5767553
Alignment:
| Q |
1 |
ccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5767219 |
ccaacatttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctctcaaccttggtaat |
5767318 |
T |
|
| Q |
101 |
tgtcgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccacca |
200 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767319 |
tgtcgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccacca |
5767418 |
T |
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| Q |
201 |
tacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctag---cacttgtttacaagatcaaaatatcatcatgtttgc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |
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| T |
5767419 |
tacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcgccgcttgtttagaagatcaaaatatcatcatgtttgc |
5767518 |
T |
|
| Q |
298 |
tgcccttttccccaatctgcagcagcttcatctca |
332 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
5767519 |
tgcccttttccccaatctgcagcagcttcatctca |
5767553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17627614 - 17627655
Alignment:
| Q |
1 |
ccaacatttggatcttcaatatgctgattttttgaatgatca |
42 |
Q |
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|||||||||||||||||| |||||| ||||||||||| |||| |
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| T |
17627614 |
ccaacatttggatcttcagtatgcttattttttgaataatca |
17627655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 19468064 - 19468138
Alignment:
| Q |
2 |
caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat |
76 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| | ||||| | ||||||||||||||||||||||| |
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| T |
19468064 |
caacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtgat |
19468138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 460 - 390
Alignment:
| Q |
2 |
caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttgg |
72 |
Q |
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|||||||||||||||||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |
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| T |
460 |
caacatttggatcttcaaaatgccatgtttatgaatgatcatgatgttgcagagttgtctttgtttcttgg |
390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 55908284 - 55908376
Alignment:
| Q |
2 |
caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt |
94 |
Q |
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|||||||||||||||||| |||| ||| |||||||||| ||| || |||||||||||||||||||||||| || | ||||| |||||| |
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| T |
55908284 |
caacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt |
55908376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 547457 - 547382
Alignment:
| Q |
1 |
ccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat |
76 |
Q |
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||||||||| ||||||||| |||||| |||||||| | |||| |||| ||| ||||||||||||||||||||| |
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| T |
547457 |
ccaacatttagatcttcaaaatgctgtttttttgactaatcaacatgttcttgacttgtctttgtttcttggtgat |
547382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 1037220 - 1037312
Alignment:
| Q |
2 |
caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt |
94 |
Q |
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|||||||||||||||||| |||| ||| |||||||||| ||| || |||||||||||||||||||||||| || | ||||| |||||| |
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| T |
1037220 |
caacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt |
1037312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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