View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_14 (Length: 319)
Name: NF10587_low_14
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 37991082 - 37990777
Alignment:
| Q |
1 |
aaaaagtggtactgcatgtcttgtatattttgctttgcttttgacaaaataggtgtacgtataagcacacgcacac------atgctgcagtattctgtt |
94 |
Q |
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| T |
37991082 |
aaaaagtggcactgcatgtcttgtttattttgctttgcttttgacaaaataggtgtacgtataagcacacgcacacgcacacatgctgcagtattctgtt |
37990983 |
T |
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| Q |
95 |
ccgggaatagtttcaagactataggtaaagagaatgaagccaataagctataggacgaataatctagacttcattttgatttttgactgaagacacaaac |
194 |
Q |
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| T |
37990982 |
ccgggaatagtttcaagactataggtaaagagaatgaagccaataagctataggacgaataatctagacttcattttgatttttgactgaagacacaaac |
37990883 |
T |
|
| Q |
195 |
tgacatgacaaaacaaaactatatgcattttgtaacatttattcaatatcaatggtgtgtaattaacgctaggtggctcccggatactggtttgggacac |
294 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
37990882 |
tgacatgacaaaacaaaactctatgcattttgtaacatttattcaatatcaatggtgtgtaattaacgctaggtggctgctggatactggtttgggacac |
37990783 |
T |
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| Q |
295 |
agtgca |
300 |
Q |
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|||||| |
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| T |
37990782 |
agtgca |
37990777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 33166111 - 33166061
Alignment:
| Q |
250 |
tgtgtaattaacgctaggtggctcccggatactggtttgggacacagtgca |
300 |
Q |
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| T |
33166111 |
tgtgtacttaacgctacgtggctactggatactggtttgggacacaatgca |
33166061 |
T |
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