View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_16 (Length: 317)
Name: NF10587_low_16
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 303
Target Start/End: Original strand, 23888508 - 23888801
Alignment:
| Q |
10 |
aaaaatctctctgctgttatcactcttcttcatttgacgctttaattttcaaatttatttctactgaaaacaacatttcaattgtgttcaattggttgga |
109 |
Q |
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| T |
23888508 |
aaaaatctctctgctgttatcactcttcttcatttgacgctttaattttcaaatttatttctactgaatacaacatttcaattgtgttcaattggttgga |
23888607 |
T |
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| Q |
110 |
gagttctctttatgtagcctcagaaaactaatcagttattcctcacattgccactgctgatgtgtatgtattttcacagttaaggtgcttcaaggactgt |
209 |
Q |
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| T |
23888608 |
aagttctctttatgtagcctcagaaaactaatcaattattcctcacattgccactgcttatgtgtatgtattttcacagttaaggtgcttcaaggactgt |
23888707 |
T |
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| Q |
210 |
ggaggaatgatttggtgtcactaaaaggtgcatgtccaaattggggtgaagaggttagttcactttgcaattgaacattcatataattaatgtt |
303 |
Q |
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| T |
23888708 |
ggaggaatgatttggtgtcactaaaaggtgcatgtccaaattgtggagaagaggttagttcactttgcaagtgaacattcatataattcatgtt |
23888801 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 41518536 - 41518607
Alignment:
| Q |
197 |
cttcaaggactgtggaggaatgatttggtgtcactaaaaggtgcatgtccaaattggggtgaagaggttagt |
268 |
Q |
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|||||||| ||||||||||||| |||| ||||||| ||| ||||||||||||| || |||||||||||| |
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| T |
41518536 |
cttcaaggcttgtggaggaatgacttggcagcactaaagggttcatgtccaaattgtggagaagaggttagt |
41518607 |
T |
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