View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_17 (Length: 312)
Name: NF10587_low_17
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 109 - 302
Target Start/End: Original strand, 36465 - 36658
Alignment:
| Q |
109 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
208 |
Q |
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| T |
36465 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
36564 |
T |
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| Q |
209 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttg |
302 |
Q |
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| T |
36565 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttg |
36658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 135 - 290
Target Start/End: Complemental strand, 8675837 - 8675682
Alignment:
| Q |
135 |
tgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccattcaatctctttttcttcttactattgg |
234 |
Q |
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||||||| || |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||| | |||| ||| | |||| |
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| T |
8675837 |
tgcagtcaatcggttctctgcaaaagaaatattcgattggatcttttgaactgctgagtaagactgctcctattcaagctctctctcttattattcttgg |
8675738 |
T |
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| Q |
235 |
tccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctt |
290 |
Q |
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| T |
8675737 |
tccatttgttgattactatctcagtggcaagttgataaccaactttaagatgtctt |
8675682 |
T |
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