View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_22 (Length: 278)
Name: NF10587_low_22
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 2486571 - 2486824
Alignment:
| Q |
19 |
ataagatctttctcattgtatttatcatgacagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaa |
118 |
Q |
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| T |
2486571 |
ataagatctttctcattgtatttatcatgacagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaa |
2486670 |
T |
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| Q |
119 |
tatacacggaatcttgctcctgcaagccggactattctgctctcgggaccagccggttagtctgaatttggtagtttataatcagggattgataagcttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2486671 |
tatacacggaatcttgctcctgcaagccggactattctgctctcgggaccagccggttagtctgaatttggtagtttataatgagggattgataagcttt |
2486770 |
T |
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| Q |
219 |
tatgtttctactgattccttgaagctaattcaaaacttcccctgttcatctctc |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2486771 |
tatgtttctactgattccttgaagctaattcaaaacttcccctgttcatatctc |
2486824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 41594955 - 41594824
Alignment:
| Q |
48 |
acagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaatatacacggaatcttgctcctgcaagccg |
147 |
Q |
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||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| || |||||||||||||| ||| | |
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| T |
41594955 |
acagtgagcagacgcgggttttgcttacaagtgctgcatatgttcatttaaagcatgctgaagtttctaaatatacgcgtaatcttgctcctgctagcag |
41594856 |
T |
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| Q |
148 |
gactattctgctctcgggaccagccggttagt |
179 |
Q |
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|||||||| ||||| || || || ||||||| |
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| T |
41594855 |
aactattcttctctctggccctgctggttagt |
41594824 |
T |
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