View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_24 (Length: 275)
Name: NF10587_low_24
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_24 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 21492 - 21238
Alignment:
| Q |
6 |
agtagcataggatcaagatggtccaagtcttgatatcaacccaaatattgttagcttgcatatcatcaattaccttaagtgcttcttcaaacctacccgt |
105 |
Q |
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| T |
21492 |
agtaccattggatcaagatggtccaagtcttgatatcaacccaaatattgttagcttgcatatcatcaattaccttaagtgcttcttcaaacctacccgt |
21393 |
T |
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| Q |
106 |
cttgcaaagtccgaaaataagttgactgtaggtgatgttatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttc |
205 |
Q |
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| T |
21392 |
tttgcaaagtccgaaaataagttgactgtaggtgatgttatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttc |
21293 |
T |
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| Q |
206 |
ccagcacttgccaaagacctatgaataccatcatagactgccttggaaagagtat |
260 |
Q |
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| T |
21292 |
cgagcacttgtcaaagacctatgaataccatcatagactgccttggaaagagtat |
21238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 43436020 - 43435775
Alignment:
| Q |
15 |
ggatcaagatggtccaagtcttgatatcaacccaaatattgttagcttgcatatcatcaattaccttaagtgcttcttcaaacctacccgtcttgcaaag |
114 |
Q |
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| T |
43436020 |
ggatcaagatagtccaagtcttgatatcaacccaaatattgttagctttcatatcatcgattaccttaagtgcttcttcaaacctccccgtcttacaaag |
43435921 |
T |
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| Q |
115 |
tccgaaaataagttgactgtaggtgatgttatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcactt |
214 |
Q |
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| T |
43435920 |
tccgaaaataagttgactgtaggtgatgctatctggctcgtagccatcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcactt |
43435821 |
T |
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| Q |
215 |
gccaaagacctatgaataccatcatagactgccttggaaagagtat |
260 |
Q |
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| T |
43435820 |
gtcaaagacctatgaataccatcatagactgccttggaaagagtat |
43435775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 43427515 - 43427270
Alignment:
| Q |
15 |
ggatcaagatggtccaagtcttgatatcaacccaaatattgttagcttgcatatcatcaattaccttaagtgcttcttcaaacctacccgtcttgcaaag |
114 |
Q |
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||||||||||||||||||||||||| |||||||||| |||| |||||||||||| ||| ||||||||||||||||||| ||||| | |||||| |||| |
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| T |
43427515 |
ggatcaagatggtccaagtcttgatgtcaacccaaagattgatagcttgcatatgatcgattaccttaagtgcttctttgaacctcctcgtcttacaaaa |
43427416 |
T |
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| Q |
115 |
tccgaaaataagttgactgtaggtgatgttatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcactt |
214 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43427415 |
tccgaaaataagttgactgtatgtgatgttatctggttcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacct |
43427316 |
T |
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| Q |
215 |
gccaaagacctatgaataccatcatagactgccttggaaagagtat |
260 |
Q |
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| T |
43427315 |
gtcaaagacctatgaataccatcatagactgccttggaaagagtat |
43427270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 34 - 260
Target Start/End: Complemental strand, 43444195 - 43443969
Alignment:
| Q |
34 |
cttgatatcaacccaaatattgttagcttgcatatcatcaattaccttaagtgcttcttcaaacctacccgtcttgcaaagtccgaaaataagttgactg |
133 |
Q |
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|||||||| ||||| |||||||||||||| ||||||||| | | |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
43444195 |
cttgatattaacccgaatattgttagctttcatatcatcgaatgccttaagtgcttcttcaaacctccccgtcttacaaagtccgaaaataagttgactg |
43444096 |
T |
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| Q |
134 |
taggtgatgttatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgccaaagacctatgaatac |
233 |
Q |
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||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43444095 |
taggtgatgctatctggctcgtagccatcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgtcaaagacctatgaatac |
43443996 |
T |
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| Q |
234 |
catcatagactgccttggaaagagtat |
260 |
Q |
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| T |
43443995 |
catcatagactgccttggaaagagtat |
43443969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 40185832 - 40186034
Alignment:
| Q |
58 |
agcttgcatatcatcaattaccttaagtgcttcttcaaacctacccgtcttgcaaagtccgaaaataagttgactgtaggtgatgttatctgactcgtag |
157 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||| | | ||| |||||||| || || || | | | ||||| |||| || || |||| |
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| T |
40185832 |
agcttgcatctcatcaattaccttacttgcttcttcaaacctcctcagcttacaaagtccagaagcaatttcattatgggtgagtttatgtggcttgtag |
40185931 |
T |
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| Q |
158 |
ccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgccaaagacctatgaataccatcatagactgccttggaaagag |
257 |
Q |
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||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||| |||||| || | ||||||||||||||| |||||||||||| |
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| T |
40185932 |
ccagcatttgtcatggtcttaacaataatttgagcttcatcaaatttcccagcacttgtaaaagacttaaggataccatcatagacttccttggaaagag |
40186031 |
T |
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| Q |
258 |
tat |
260 |
Q |
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||| |
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| T |
40186032 |
tat |
40186034 |
T |
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