View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10587_low_25 (Length: 272)
Name: NF10587_low_25
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 2480312 - 2480552
Alignment:
| Q |
25 |
ccaagctccacccttaagatccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaag |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480312 |
ccaagctccacccttaagatccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaag |
2480411 |
T |
|
| Q |
125 |
tgagtgattgagattgtttttgacaacattttgtaagcttttgtttaaggagatgagaaagagcatttgaagtgtggaaagagttattattatcatcaca |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480412 |
tgagtgattgagattgtttttgacaacattttgtaagcttttgtttaaggagatgagaaagagcatttgaagtgtggaaagagttattattatcatcaca |
2480511 |
T |
|
| Q |
225 |
atttggtgttagggaattggcatcttcagtttgatcctttg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480512 |
atttggtgttagggaattggcatcttcagtttgatcctttg |
2480552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 49532904 - 49532812
Alignment:
| Q |
45 |
ccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaagtgagtgattgaga |
137 |
Q |
| |
|
||||||||| |||||||||| ||| |||| ||||||||| ||||| ||||||||||||||| ||| |||||||||||||| |||||| |||| |
|
|
| T |
49532904 |
ccaattagaatcagaatgtggtccagctcttttttgccacactccaatgtgagaattatcattatctagcctcaaacaagtaagtgatggaga |
49532812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 44648467 - 44648531
Alignment:
| Q |
67 |
cctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaagtgagtga |
131 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||||| |||||||||||| |
|
|
| T |
44648467 |
cctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtga |
44648531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University