View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_26 (Length: 270)
Name: NF10587_low_26
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 9926256 - 9926060
Alignment:
| Q |
17 |
aatccatgctaaaactaattcaatagttattccgttgtatatctcaaggtaaatgggtttgctagaaattacctgcgaattagctacaaaaatggacgta |
116 |
Q |
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| T |
9926256 |
aatccatgctaaaactaattcaatagttattccgttgtatatctcaaggtaaatgtgtttgctagaaattacatgcgaattagctacaaaaatggacgta |
9926157 |
T |
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| Q |
117 |
gcaaattgcatattttcttgtagttcaccttcggtgaatgtttgtgagagagagatatataaagatttaagagtgagagatggaaaaagttttttaaaa |
215 |
Q |
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| T |
9926156 |
gcaaattgcatattttcttgtagttcaccttcgatgaatgtttgtgaga--gagatatataaagatttaagagtgagagatggaaaaagttttataaaa |
9926060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 9937319 - 9937240
Alignment:
| Q |
141 |
tcaccttcggtgaatgtttgtgagagagagatatataaagatttaagagtgagagatggaaaaagttttttaaaaaattatact |
224 |
Q |
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| T |
9937319 |
tcaccttcaatgaatgtttgtga----gagatatatgaagatttaagagtgagagatggaaaaaggtttttaaaaaaatatact |
9937240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 20114237 - 20114152
Alignment:
| Q |
36 |
tcaatagttattccgttgtatatctcaaggtaaatgggtttgctagaaattacctgcgaattagctacaaaaatggacgtagcaaa |
121 |
Q |
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| T |
20114237 |
tcaataggtattccgtagcatatctgtaggtaaactcgtgtgctaggaattagctgcgaattagctccagaaatgggcgtagcaaa |
20114152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 2167272 - 2167149
Alignment:
| Q |
17 |
aatccatgctaaaactaattcaatagttattccgttgtatatctcaaggtaaatgggtttgctagaaattacctgcgaattagctacaaaaatggacgta |
116 |
Q |
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||||||||||| || |||||||||||||||||| | ||||||| || ||||| ||||| |||||||||| || || | ||||||| ||| ||| | || |
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| T |
2167272 |
aatccatgctacggctgattcaatagttattccgtagcatatctctagctaaataggtttactagaaattagctacggagtagctacgaaattggcctta |
2167173 |
T |
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| Q |
117 |
gcaaattgcatattttcttgtagt |
140 |
Q |
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|||||| ||||||||||||||||| |
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| T |
2167172 |
gcaaatcgcatattttcttgtagt |
2167149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 3081422 - 3081355
Alignment:
| Q |
73 |
gtttgctagaaattacctgcgaattagctacaaaaatggacgtagcaaattgcatattttcttgtagt |
140 |
Q |
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||||||||||||||| || | |||||||||||| |||| |||||||||| ||||||||||||||||| |
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| T |
3081422 |
gtttgctagaaattaactacatattagctacaaatatggtcgtagcaaatcgcatattttcttgtagt |
3081355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 10587091 - 10587004
Alignment:
| Q |
35 |
ttcaatagttattccgttgtatatctcaaggtaaatgggtttgctagaaattacctgcgaattagctacaaaaatggacgtagcaaat |
122 |
Q |
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||||||||||||||||| | |||||||||| ||||||||| || | ||||| |||||||||| || ||||| ||| |||||||||| |
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| T |
10587091 |
ttcaatagttattccgtagcatatctcaagctaaatgggtatggtttgaattagctgcgaattaactgcaaaagtggtcgtagcaaat |
10587004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 24831664 - 24831590
Alignment:
| Q |
66 |
taaatgggtttgctagaaattacctgcgaattagctacaaaaatggacgtagcaaattgcatattttcttgtagt |
140 |
Q |
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| T |
24831664 |
taaatgagtttgctagaaattagctgcggcgtagctaggaaaatggccgtagcaaatcacatattttcttgtagt |
24831590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 2254538 - 2254437
Alignment:
| Q |
36 |
tcaatagttattccgttgtatatctcaaggtaaatgggtttgctagaaattacctgcgaattagctacaaaaatggacgtagcaaattgcatattttctt |
135 |
Q |
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||||||| |||||||| |||||||| || |||| ||||||||| ||||||||||||||| ||| ||||||| ||||||| || ||||||||||| |
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| T |
2254538 |
tcaataggtattccgtaatatatctctagctaaactcgtttgctaggaattacctgcgaattcgctgtgaaaatgggcgtagcagatcacatattttctt |
2254439 |
T |
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| Q |
136 |
gt |
137 |
Q |
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|| |
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| T |
2254438 |
gt |
2254437 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 28744374 - 28744418
Alignment:
| Q |
96 |
ttagctacaaaaatggacgtagcaaattgcatattttcttgtagt |
140 |
Q |
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|||||||| ||||||| |||||||||| |||||||||||||||| |
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| T |
28744374 |
ttagctacgaaaatgggcgtagcaaatcacatattttcttgtagt |
28744418 |
T |
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