View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_3 (Length: 481)
Name: NF10587_low_3
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 469
Target Start/End: Complemental strand, 45107291 - 45106839
Alignment:
| Q |
17 |
ttcatttgttaggcattaaattgtttttgccaatttacatgactacaagcacaatgaaggtagaatatggattttggagatcatcatattcaggatcaac |
116 |
Q |
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| T |
45107291 |
ttcatttgttaggcattaaattgtttttgccaatttacatgactacaagcacaatgaaggtagaatatggattttggagatcatcatattcaggatcaac |
45107192 |
T |
|
| Q |
117 |
acttgagacttctctgtttgttttatttacgggttattttttaaaaatggtagcatgctttctatcttcactcattttcaacatgcctttaaaggatggt |
216 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45107191 |
acttgagacttctttgtttgttttatttactggttattttttaaaaatggtagcatgctttctatcttcactcattttcaacatgcctttaaaggatggt |
45107092 |
T |
|
| Q |
217 |
atctcccttgccctacttttgaactgcaaaggtgttgtggaagtaaacatgtactctaccgcattggatagaaatgtaagtactaaaatctctccccttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45107091 |
atctcccttgccctacttttgaactgcaaaggtgttgtggaagtaaacatgtactctaccgcattggatagaaatgtatgtactaaaatctctccccttc |
45106992 |
T |
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| Q |
317 |
atcacacacattttctagggaaaaaattgaattaaccgtagaaattgagtatgcttttatttttaattttctgttcttgatcaaatatacttttgaatgc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
45106991 |
atcacacacattttctagggaaaaaattgaattaaccgtagaaattgagtatgcttttattttaaattttctgttcttgatcaaatatacttatgaatgc |
45106892 |
T |
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| Q |
417 |
aggatatccgtccgaaaatatattgtgtggttatattcataatcatggtttca |
469 |
Q |
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| T |
45106891 |
aggatatccgtccgaaaatatattgtgtggttatattcataatcatggtttca |
45106839 |
T |
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