View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_32 (Length: 249)
Name: NF10587_low_32
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_32 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 5941311 - 5941219
Alignment:
| Q |
157 |
gcgttagcgtcggatacgtcgatcatattcagtcaccggttagttctcctatctttcttgttcacgttcattgagatatgttgagagaatgaa |
249 |
Q |
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| T |
5941311 |
gcgttagcatcggatacgtcgatcatattcagtcaccggttagttctcctatctttctcgttcacgttcattgagatatgttgagagaatgaa |
5941219 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 36780044 - 36779993
Alignment:
| Q |
59 |
gtgttgttaaatgagactttttaatctcatccatttagttttaatctaaagg |
110 |
Q |
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| T |
36780044 |
gtgttgtaaaatgaaactttttaatctcatccgtttagttttaatccaaagg |
36779993 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 36780097 - 36780061
Alignment:
| Q |
16 |
gatgaagcggttaggaagaattaaaagaggtgataga |
52 |
Q |
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| T |
36780097 |
gatgaagcggttaggaagaattaaaagaaatgataga |
36780061 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 1274455 - 1274506
Alignment:
| Q |
59 |
gtgttgttaaatgagactttttaatctcatccatttagttttaatctaaagg |
110 |
Q |
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| T |
1274455 |
gtgttgttaaatgaggctttttaatctcagtcaattaattttaatctaaagg |
1274506 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 32303004 - 32302953
Alignment:
| Q |
59 |
gtgttgttaaatgagactttttaatctcatccatttagttttaatctaaagg |
110 |
Q |
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| T |
32303004 |
gtgttgtaaaatgaaactttttaatctcatctgtttagttttaatccaaagg |
32302953 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 22981179 - 22981215
Alignment:
| Q |
16 |
gatgaagcggttaggaagaattaaaagaggtgataga |
52 |
Q |
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| T |
22981179 |
gatgaagcggttaggaagaattaaaagaaatgataga |
22981215 |
T |
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