View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10587_low_33 (Length: 243)
Name: NF10587_low_33
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40631624 - 40631402
Alignment:
| Q |
1 |
tctaaatacatgagaaatcaaaaaattaatagaagaaataaaatctaaccaattgtaccatctattccttaatttccaaggcaccccctaggatgatttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40631624 |
tctaaatacatgagaaatcaaaaaattaatagaagaaatcaaatctaaccaattgtaccatctattcattaatttccaaggcaccccctaggatgatttg |
40631525 |
T |
|
| Q |
101 |
aatgccaaaaccactagcattgaatctgtctctaactagaaattgctccaatttcggtccttcgctatctccatagctctcatggcaccaatcagttaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40631524 |
aatgccaaaaccactagcattgaatctgtctctaactagaaattgctccaatttcggtccttcgctatctccatagctctcatggcaccaatcagttaag |
40631425 |
T |
|
| Q |
201 |
ccctcaaagaattaccaacgccc |
223 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
40631424 |
cactcaaagaattaccaacgccc |
40631402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University