View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_35 (Length: 243)
Name: NF10587_low_35
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 37738839 - 37739073
Alignment:
| Q |
7 |
atattatcttttttagtaaacacaaatttagatgagttgagttccgagaggcactagggttaggacaaattttaagacttaaaattgtttataaatatac |
106 |
Q |
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| T |
37738839 |
atattatcttttttagtaaacacaaatttagatgagttgagttccgagaggcactagggttaggacaaattttaagacttaaaa-tgtttataaatatac |
37738937 |
T |
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| Q |
107 |
ttacatatcatctattaaagagatcttcaagtcggcaacaaaaatataattaagttaattatttatcaaccgaatcaatcttcattga--ttatataata |
204 |
Q |
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| T |
37738938 |
-tacatattatctattaaagagatcttcaagtcggcaacaaaaatataattaagtcaattatttatcaaccgaatcaatcttcattgactatatataata |
37739036 |
T |
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| Q |
205 |
caccctttagtcattattatttttaagggactctctg |
241 |
Q |
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|||||| ||||||||||||||||||||||||| |||| |
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| T |
37739037 |
caccctctagtcattattatttttaagggactttctg |
37739073 |
T |
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