View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_36 (Length: 240)
Name: NF10587_low_36
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49159319 - 49159541
Alignment:
| Q |
1 |
tcggttgcttgttcaacaaaaagaggagcttctctatgaataggcaaaaaatgctcggtttctaaagcaatttacaaaatttatcatgagttgaaaaaca |
100 |
Q |
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| T |
49159319 |
tcggttgcttgttcaacaaaaagaggagcttctctatgaataggcaaaaaatgctcggtttctaaagcaatttacaaaatttatcatgagttgaaaaacg |
49159418 |
T |
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| Q |
101 |
ttccatggaattgatagaaaaactttgttatagcaaatggacttaaaaaagattttgaggtttcttactaaagtcgcctttatgatcaataggttctcca |
200 |
Q |
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| T |
49159419 |
ttccatggaattgatagaaaaactttgttatagcaaatggacttaaaaaagattttgagctttcttactaaagtcgcctttatgatcaataggttctcca |
49159518 |
T |
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| Q |
201 |
ataacattcatgatacgtccaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
49159519 |
ataacattcatgatacgtccaag |
49159541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 49155257 - 49155473
Alignment:
| Q |
4 |
gttgcttgttcaacaaaaagaggagcttctctatgaataggcaaaaaatgctcggtttctaaagcaatttacaaaatttatcatgagttgaaaaacattc |
103 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||| | |||| ||||||| ||||||||| || | |
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| T |
49155257 |
gttgcttgctcaacaaaagcaggagcttctctatgaataggcaaataatgctcggtaactaaagaaattcagaaaaattatcatcagttgaaaatcact- |
49155355 |
T |
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| Q |
104 |
catggaattgatagaaaaactttgttatagcaaatggacttaaaaaagatttt--gaggtttcttactaaagtcgcctttatgatcaataggttctccaa |
201 |
Q |
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| T |
49155356 |
-atggaattgatagaaatactttattaaatcaattagact---atttttttttaagaggtttcttactgaattcgcctttatgatcaataggttctccaa |
49155451 |
T |
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| Q |
202 |
taacattcatgatacgtccaag |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
49155452 |
taacattcatgatacgtccaag |
49155473 |
T |
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