View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_37 (Length: 240)
Name: NF10587_low_37
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 31273446 - 31273662
Alignment:
| Q |
18 |
tgataattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgcta |
117 |
Q |
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| T |
31273446 |
tgataattggttaaatccctctatggattgaagcgagcctccagaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgcta |
31273545 |
T |
|
| Q |
118 |
actcatatcattcactatttaccaaatcttcagctactacattcactgtcattttggtctatata---gatattattttagcaggaaattcattatctga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| |
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| T |
31273546 |
actcatatcattcactatttaccaaatcttcagctactacattcaccatcattttggtctatgtagatgatattattttagcaggaaattcat--tctga |
31273643 |
T |
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| Q |
215 |
gtttaacaacatcaaatcc |
233 |
Q |
| |
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||||||||||||||||||| |
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| T |
31273644 |
gtttaacaacatcaaatcc |
31273662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 26214921 - 26215138
Alignment:
| Q |
22 |
aattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactc |
121 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
26214921 |
aattggtaaaatccctctatggattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttactggctcaaggttacaagcatgctaactc |
26215020 |
T |
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| Q |
122 |
atatcattcactatttaccaaatcttcagctactacattcactgtcattttggtctatata---gatattattttagcaggaaattcattatctgagttt |
218 |
Q |
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| T |
26215021 |
agatcattcactctttaccaaatcatcagctactgcattcactatccttttggtttatgtagatgatattattttagcaggcaattcattatctgagttt |
26215120 |
T |
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| Q |
219 |
aacaacatcaaatccatc |
236 |
Q |
| |
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||||||||||||| |||| |
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| T |
26215121 |
aacaacatcaaattcatc |
26215138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 6532082 - 6532190
Alignment:
| Q |
22 |
aattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactc |
121 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | | || ||||| ||| ||| |||||| ||||||||||| ||||| |
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| T |
6532082 |
aattggttaaatccctctatggattgaaacaagcctctagaaaatggtatgaaaagttaacatctttattactggttcaaggctacaagcatgccaactc |
6532181 |
T |
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| Q |
122 |
atatcattc |
130 |
Q |
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| T |
6532182 |
agatcattc |
6532190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 23374270 - 23374053
Alignment:
| Q |
22 |
aattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactc |
121 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| | |
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| T |
23374270 |
aattggttaaatccctctatggattaaagcaagcctctagaaaatggtatgaaaggctcacctctttattgctggctcaaggttacaagcatgctaaccc |
23374171 |
T |
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| Q |
122 |
atatcattcactatttaccaaatcttcagctactacattcactgtcattttggtctatata---gatattattttagcaggaaattcattatctgagttt |
218 |
Q |
| |
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||| |||||||| ||||||||||| ||||| | |||||| | || ||||||| ||| || ||||||||| |||| ||||||||||||||||||| |
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| T |
23374170 |
ataccattcactttttaccaaatccaaagctattgcattcaatttctttttggtatatgtagatgatattattcaagcatgaaattcattatctgagttc |
23374071 |
T |
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| Q |
219 |
aacaacatcaaatccatc |
236 |
Q |
| |
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|||||||||||||||||| |
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| T |
23374070 |
aacaacatcaaatccatc |
23374053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 16157853 - 16157946
Alignment:
| Q |
22 |
aattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgc |
115 |
Q |
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||||||| ||||| ||||||| || ||||| ||| |||||||||||||||||||||| | |||| ||| ||||||||||||| |||||||| |
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| T |
16157853 |
aattggtaaaatctctctatggtttaaagcaggccagtagaaaatggtatgaaaggctcgctgctttattactggctcaaggatataagcatgc |
16157946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 4941758 - 4941677
Alignment:
| Q |
22 |
aattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctcaagg |
103 |
Q |
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||||| ||||||| ||||||| || ||||| ||| |||||||||||||||||||||||| |||| ||| |||||||||| |
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| T |
4941758 |
aattgattaaatctctctatggtttaaagcaggccagtagaaaatggtatgaaaggctcactgctttattactggctcaagg |
4941677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 5026838 - 5026757
Alignment:
| Q |
22 |
aattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctcaagg |
103 |
Q |
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||||| ||||||| ||||||| || ||||| ||| |||||||||||||||||||||||| |||| ||| |||||||||| |
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| T |
5026838 |
aattgattaaatctctctatggtttaaagcaggccagtagaaaatggtatgaaaggctcactgctttattactggctcaagg |
5026757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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