View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_4 (Length: 408)
Name: NF10587_low_4
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 153 - 405
Target Start/End: Complemental strand, 3717742 - 3717484
Alignment:
| Q |
153 |
tttattgtttgtcttcacaactcgccaaaaaa-tacatgttatctttcttcgacatcataaactatagctatacat-----catatgatgaaactttgct |
246 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3717742 |
tttattgtttgtcttcacaactcgtcaaaaaaatacatgttatctttcttcgacatcataaactatagctatacattacatcatatgatgaaactttgct |
3717643 |
T |
|
| Q |
247 |
caaagttcttgtcctctatccacaaactccatcagtgaaatccatggggaataaattctcacaaaatctctgtgaatgccctggtatcccacgaaagaag |
346 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3717642 |
caaagttcttgtcctctatccacaaactccatcatcgaaatccatggggaataaattctcacaaaatctcagtgaatgccctggtatcccacgaaagaag |
3717543 |
T |
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| Q |
347 |
catatggtacaaactcatagtgaaaaatgagaacaccacactcacctctctgcttctcc |
405 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
3717542 |
catagagtaccaactcatagtgaaaaatgagaacaccacactcacctctttgtttctcc |
3717484 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 8352900 - 8352945
Alignment:
| Q |
109 |
gagaaaaagtggttgtcactaaagttgtacaaatatcactcttctt |
154 |
Q |
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| T |
8352900 |
gagaaaaagtggttgtcacaaaggttgtacaaatatcactcatctt |
8352945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 2629945 - 2629990
Alignment:
| Q |
109 |
gagaaaaagtggttgtcactaaagttgtacaaatatcactcttctt |
154 |
Q |
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| T |
2629945 |
gagaaaaagtgattgtcacaaaggttgtacaaatatcactcttctt |
2629990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 15022183 - 15022145
Alignment:
| Q |
109 |
gagaaaaagtggttgtcactaaagttgtacaaatatcac |
147 |
Q |
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||||||||||||||||||| || |||||||||||||||| |
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| T |
15022183 |
gagaaaaagtggttgtcacaaaggttgtacaaatatcac |
15022145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 52378986 - 52378941
Alignment:
| Q |
109 |
gagaaaaagtggttgtcactaaagttgtacaaatatcactcttctt |
154 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||| |||| |
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| T |
52378986 |
gagaaaaagtggttgtcacaaaagttgtacaaataccactcctctt |
52378941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 28544148 - 28544180
Alignment:
| Q |
109 |
gagaaaaagtggttgtcactaaagttgtacaaa |
141 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
28544148 |
gagaaaaagtggttgtcacaaaagttgtacaaa |
28544180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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