View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_47 (Length: 212)
Name: NF10587_low_47
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 13009301 - 13009479
Alignment:
| Q |
17 |
agggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
116 |
Q |
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| T |
13009301 |
agggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
13009400 |
T |
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| Q |
117 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggatt |
195 |
Q |
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| T |
13009401 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggatt |
13009479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 12976902 - 12977080
Alignment:
| Q |
17 |
agggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12976902 |
agggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
12977001 |
T |
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| Q |
117 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggatt |
195 |
Q |
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| T |
12977002 |
tgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagttttaaagatggatt |
12977080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 13031659 - 13031837
Alignment:
| Q |
17 |
agggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
116 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
13031659 |
agggagatgaagagttgttgcggacttttgaaggagattctggagattgagaagtgtgctagggggatgaatgaactggctgattctttgcggtttcctt |
13031758 |
T |
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| Q |
117 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggatt |
195 |
Q |
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| T |
13031759 |
tgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgaaggtttgtgaaggtttgaaagatggatt |
13031837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 13012859 - 13013037
Alignment:
| Q |
17 |
agggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
116 |
Q |
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||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13012859 |
agggagatgaagagttgttgcggacttttgagggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctgtggaatttcctt |
13012958 |
T |
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| Q |
117 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggatt |
195 |
Q |
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||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||| |||||||||||||||| |
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| T |
13012959 |
tgagtgaagagaaagaagaggaacttagggttaaagttgcagatgtggtgattgtttgtgaaagtttgaaagatggatt |
13013037 |
T |
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