View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10587_low_49 (Length: 211)

Name: NF10587_low_49
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10587_low_49
NF10587_low_49
[»] scaffold0011 (1 HSPs)
scaffold0011 (24-193)||(15185-15355)
[»] chr2 (3 HSPs)
chr2 (83-193)||(16383293-16383403)
chr2 (27-61)||(41541527-41541561)
chr2 (27-76)||(37592194-37592243)
[»] chr3 (10 HSPs)
chr3 (83-190)||(17582722-17582829)
chr3 (73-176)||(271389-271491)
chr3 (27-61)||(38414957-38414991)
chr3 (27-83)||(49429534-49429590)
chr3 (27-83)||(50332923-50332979)
chr3 (27-82)||(27394581-27394636)
chr3 (27-62)||(41768447-41768482)
chr3 (27-61)||(1102683-1102717)
chr3 (27-61)||(54457227-54457261)
chr3 (27-83)||(50676832-50676888)
[»] chr6 (3 HSPs)
chr6 (27-83)||(5641655-5641711)
chr6 (27-66)||(7164768-7164807)
chr6 (27-59)||(8330480-8330512)
[»] chr5 (5 HSPs)
chr5 (27-83)||(20191515-20191571)
chr5 (27-82)||(34729545-34729600)
chr5 (27-61)||(12256483-12256517)
chr5 (27-76)||(15470593-15470642)
chr5 (27-83)||(15680866-15680922)
[»] chr4 (8 HSPs)
chr4 (18-53)||(56360626-56360661)
chr4 (27-81)||(51707193-51707247)
chr4 (27-83)||(25104401-25104457)
chr4 (27-83)||(32037641-32037697)
chr4 (27-83)||(36993115-36993171)
chr4 (27-83)||(49607624-49607680)
chr4 (27-83)||(49811373-49811429)
chr4 (27-83)||(56555622-56555678)
[»] chr7 (6 HSPs)
chr7 (27-61)||(5228144-5228178)
chr7 (27-60)||(26606097-26606130)
chr7 (30-83)||(29357877-29357930)
chr7 (27-83)||(10091422-10091478)
chr7 (24-76)||(33342791-33342843)
chr7 (27-83)||(48258149-48258205)
[»] chr1 (6 HSPs)
chr1 (27-61)||(19424120-19424154)
chr1 (27-61)||(29332358-29332392)
chr1 (23-76)||(41618732-41618785)
chr1 (30-83)||(46532460-46532513)
chr1 (27-83)||(4684142-4684198)
chr1 (30-66)||(40209897-40209933)
[»] chr8 (2 HSPs)
chr8 (27-67)||(3956726-3956766)
chr8 (27-83)||(38289200-38289256)


Alignment Details
Target: scaffold0011 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 15355 - 15185
Alignment:
Q  24 cagttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa-gtacataccaatgtattgagagctcctcctttgaatctg 122  Q
    |||| ||||| ||||||||||||||||| | | || ||| ||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  15355 cagtcattcatctttaaggtgaatttctttaggcgttaagctacctggcaaaaaaaaaaaagtacataccaatgtattgagagctcctcctttgaatctg 15256  T
Q  123 tgaggaacagatggtcttttttcacgagacacataaacaactagtggcatttctttttggtcattaatgat 193  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15255 tgaggaacatttggtcttttttcacgagacacataaacaactagtggcatttctttttggtcattaatgat 15185  T

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Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 16383293 - 16383403
Alignment:
Q  83 agtacataccaatgtattgagagctcctcctttgaatctgtgaggaacagatggtcttttttcacgagacacataaacaactagtggcatttctttttgg 182  Q
    |||||| ||||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16383293 agtacacaccaatgtattgagagctcctcctttgtatctatgaggaacatgtggtcttttttcacgagacacataaacaactagtggcatttccttttgg 16383392  T
Q  183 tcattaatgat 193  Q
    |||||||||||    
T  16383393 tcattaatgat 16383403  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 41541561 - 41541527
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgcta 61  Q
    |||||||| ||||||||||||||||||||||||||    
T  41541561 ttattcacttttaaggtgaatttctctggccgcta 41541527  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 37592243 - 37592194
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaa 76  Q
    ||||| ||||||||||||||||||||| ||||||| ||||  ||||||||    
T  37592243 ttatttacctttaaggtgaatttctctagccgctagactacttgacaaaa 37592194  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 17582722 - 17582829
Alignment:
Q  83 agtacataccaatgtattgagagctcctcctttgaatctgtgaggaacagatggtcttttttcacgagacacataaacaactagtggcatttctttttgg 182  Q
    |||||| ||||||||||| || |||||||||||| |||| |||||||||  ||||||| |||||||||||||||||||||| ||||||||||| |||| |    
T  17582722 agtacacaccaatgtattaagtgctcctcctttgtatctatgaggaacatctggtcttctttcacgagacacataaacaaccagtggcatttccttttcg 17582821  T
Q  183 tcattaat 190  Q
    ||||||||    
T  17582822 tcattaat 17582829  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 271491 - 271389
Alignment:
Q  73 aaaataaaaaagtacataccaatgtattgagagctcctcctttgaatctgtgaggaacagatggtcttttttcacgagacacataaacaactagtggcat 172  Q
    ||||||||||| |||| |||||||||||||| || |||||||||||| |||||||||  ||||| ||| ||||||||||||||||||||||  |||| ||    
T  271491 aaaataaaaaa-tacacaccaatgtattgagggcacctcctttgaatttgtgaggaagtgatggccttctttcacgagacacataaacaacacgtggaat 271393  T
Q  173 ttct 176  Q
    ||||    
T  271392 ttct 271389  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 38414957 - 38414991
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgcta 61  Q
    |||||||||||||||||||||||||||||||||||    
T  38414957 ttattcacctttaaggtgaatttctctggccgcta 38414991  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 49429534 - 49429590
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||||||||||||||| |||||||| |||  |||| ||| ||||||    
T  49429534 ttattcacctttaaggtgaatttctctagccgctaagctatttgaccaaaaaaaaaa 49429590  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 50332979 - 50332923
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||| ||||||||||| ||||||| ||||  ||| |||||||||||    
T  50332979 ttattcacctttaagatgaatttctctagccgctagactacttgataaaataaaaaa 50332923  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 27394581 - 27394636
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaa 82  Q
    ||||||||||||||||||||||||||| |||||||  |||  |||||||| |||||    
T  27394581 ttattcacctttaaggtgaatttctctagccgctaggctacttgacaaaaaaaaaa 27394636  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 41768447 - 41768482
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaa 62  Q
    ||||||||||||||||||||||||||| ||||||||    
T  41768447 ttattcacctttaaggtgaatttctctagccgctaa 41768482  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 1102717 - 1102683
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgcta 61  Q
    ||||||||||||||||||||||||||| |||||||    
T  1102717 ttattcacctttaaggtgaatttctctagccgcta 1102683  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 54457227 - 54457261
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgcta 61  Q
    ||||||||||||||||||||||||||| |||||||    
T  54457227 ttattcacctttaaggtgaatttctctagccgcta 54457261  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 50676888 - 50676832
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    |||||||||||||||||||||||||||  || ||| ||||  |||||||| ||||||    
T  50676888 ttattcacctttaaggtgaatttctctaaccactagactacttgacaaaaaaaaaaa 50676832  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 5641711 - 5641655
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||||||||||||||| ||||||| ||||  |||||||| ||||||    
T  5641711 ttattcacctttaaggtgaatttctctagccgctagactacttgacaaaaaaaaaaa 5641655  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 7164768 - 7164807
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaacta 66  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  7164768 ttattcacctttaaggtgaatttctctagccgctagacta 7164807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 8330512 - 8330480
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgc 59  Q
    ||||||||||||||||||||||||||| |||||    
T  8330512 ttattcacctttaaggtgaatttctctagccgc 8330480  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 20191515 - 20191571
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||||| ||||||||||||| ||| ||||  |||||||| ||||||    
T  20191515 ttattcacctttaaggtaaatttctctggccactagactacttgacaaaaaaaaaaa 20191571  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 34729545 - 34729600
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaa 82  Q
    |||||||||||||||||||||||||||  ||||| |||||  |||||||| |||||    
T  34729545 ttattcacctttaaggtgaatttctctaaccgcttaactacttgacaaaaaaaaaa 34729600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 12256517 - 12256483
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgcta 61  Q
    ||||||||||||||||||||||||||| |||||||    
T  12256517 ttattcacctttaaggtgaatttctctagccgcta 12256483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 15470642 - 15470593
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaa 76  Q
    ||||||| ||||||||||||||||||| ||| ||||||||  ||||||||    
T  15470642 ttattcatctttaaggtgaatttctctagccactaaactacttgacaaaa 15470593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 15680922 - 15680866
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    |||||||||||||||||||||||||||  ||||||  |||  |||||||| ||||||    
T  15680922 ttattcacctttaaggtgaatttctctaaccgctaggctacttgacaaaaaaaaaaa 15680866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 56360626 - 56360661
Alignment:
Q  18 acatttcagttattcacctttaaggtgaatttctct 53  Q
    |||||||| |||||||||||||||||||||||||||    
T  56360626 acatttcacttattcacctttaaggtgaatttctct 56360661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 51707193 - 51707247
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaa 81  Q
    ||||||| ||||||||||||||||| ||||| ||||||||  |||||||| ||||    
T  51707193 ttattcatctttaaggtgaatttctttggccactaaactacttgacaaaaaaaaa 51707247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 25104401 - 25104457
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||| |||||||||||||||||| |||| ||| ||||  |||||||| ||||||    
T  25104401 ttattcatctttaaggtgaatttctccggccactagactacttgacaaaaaaaaaaa 25104457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 32037641 - 32037697
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    |||||||| ||||| |||||||||||| ||||||||||||  | |||||| ||||||    
T  32037641 ttattcacatttaaagtgaatttctctagccgctaaactattttacaaaaaaaaaaa 32037697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 36993115 - 36993171
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||| ||||||||||||||||||| ||| |||  ||| ||||||||| ||||||    
T  36993115 ttattcatctttaaggtgaatttctctagccactaggctacctgacaaaaaaaaaaa 36993171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 49607624 - 49607680
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||||||||||||||| |||| || ||||  | |||||| ||||||    
T  49607624 ttattcacctttaaggtgaatttctctagccgatagactactttacaaaagaaaaaa 49607680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 49811429 - 49811373
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||| ||||||||||| |||||||  |||  |||||||| ||||||    
T  49811429 ttattcacctttaagatgaatttctctagccgctaggctacttgacaaaaaaaaaaa 49811373  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 56555622 - 56555678
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||||||||||||||| |||| ||  ||| ||||| ||| ||||||    
T  56555622 ttattcacctttaaggtgaatttctctagccgttaggctacctgaccaaaaaaaaaa 56555678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 5228144 - 5228178
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgcta 61  Q
    ||||||||||||||||||||||||||| |||||||    
T  5228144 ttattcacctttaaggtgaatttctctagccgcta 5228178  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 26606130 - 26606097
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgct 60  Q
    ||||||||||||||||||||||||||| ||||||    
T  26606130 ttattcacctttaaggtgaatttctctagccgct 26606097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 29357877 - 29357930
Alignment:
Q  30 ttcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||||||||||  ||||||||  |||| |||||||| ||||||    
T  29357877 ttcacctttaaggtgaatttcttcggccgctaggctaattgacaaaaaaaaaaa 29357930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 10091478 - 10091422
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||||||||||||||| ||| |||  |||  |||||||| ||||||    
T  10091478 ttattcacctttaaggtgaatttctctagccactacgctatttgacaaaaaaaaaaa 10091422  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 33342843 - 33342791
Alignment:
Q  24 cagttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaa 76  Q
    |||||||||||  ||||||||||||||||| ||||||| ||||  ||||||||    
T  33342843 cagttattcactgttaaggtgaatttctctagccgctagactacttgacaaaa 33342791  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 48258205 - 48258149
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    |||||||||||||| |||||||| ||| |||||||  ||| ||||||||| ||||||    
T  48258205 ttattcacctttaaagtgaatttgtctagccgctaggctacctgacaaaaaaaaaaa 48258149  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 19424120 - 19424154
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgcta 61  Q
    ||||||||||||||||||||||||||| |||||||    
T  19424120 ttattcacctttaaggtgaatttctctagccgcta 19424154  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 29332358 - 29332392
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgcta 61  Q
    ||||||||||||||||||||||||||| |||||||    
T  29332358 ttattcacctttaaggtgaatttctctagccgcta 29332392  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 41618785 - 41618732
Alignment:
Q  23 tcagttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaa 76  Q
    |||||||||||| |||||||||||||||||| ||||| | ||||  ||||||||    
T  41618785 tcagttattcacatttaaggtgaatttctctagccgccagactacttgacaaaa 41618732  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 46532513 - 46532460
Alignment:
Q  30 ttcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||||||||||||||||||||  ||||||| |||  |||||||| ||||||    
T  46532513 ttcacctttaaggtgaatttctctaaccgctaagctacttgacaaaaaaaaaaa 46532460  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 4684198 - 4684142
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||| |||||||||||||| |||| ||| ||||||||  |||||||| ||||||    
T  4684198 ttattcatctttaaggtgaattactctagccactaaactacttgacaaaaaaaaaaa 4684142  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 40209933 - 40209897
Alignment:
Q  30 ttcacctttaaggtgaatttctctggccgctaaacta 66  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  40209933 ttcacctttaaggtgaatttctctggccactagacta 40209897  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 3956766 - 3956726
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaa 67  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  3956766 ttattcacctttaaggtgaatttctctagccactagactaa 3956726  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 38289256 - 38289200
Alignment:
Q  27 ttattcacctttaaggtgaatttctctggccgctaaactaactgacaaaataaaaaa 83  Q
    ||||||| ||||||||||||||||||| ||| |||| |||  |||||||| ||||||    
T  38289256 ttattcatctttaaggtgaatttctctagccactaagctacttgacaaaaaaaaaaa 38289200  T

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