View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_5 (Length: 403)
Name: NF10587_low_5
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 42116329 - 42116712
Alignment:
| Q |
1 |
atcataatacatggaatattgttgtaacattatgaaacagtcaatgcacgtgtaacaaccaccttgatttactttttcagttgagattgcctatcataag |
100 |
Q |
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| T |
42116329 |
atcataatacatggaatattgttgtaacattatgaaacagtcaatgcacgtgtaacaaccaccttgatttactttttcagttgagactgcttatcataag |
42116428 |
T |
|
| Q |
101 |
atttcatttcatcactaaacttgatgcaaaagtttcatctgattttattattaaaaataaataaatcatctaattctaactaaaatgcatacatattgga |
200 |
Q |
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| T |
42116429 |
atttcatttcatcactaaacttgatgcaaaagtttcatctgattttattattaaaaataaataaatcatctaattctaactaaaatgcatacatattgga |
42116528 |
T |
|
| Q |
201 |
gatatcatcacaccaactggttggtagcgttgataaaaaactttgtttaacaaatctacttatatataaagtaaattaagtggcactttttcatttaatt |
300 |
Q |
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| T |
42116529 |
gatatcatcacaccaactggttggtagcgttgataaaaaactttgtttaacaaatctacttatatataaagtaaattaagtggcactttttcatttaatt |
42116628 |
T |
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| Q |
301 |
ccaattcctttctatttgttaaactcaaacaaaataaatatttaacaactagctttagaagataacacatcttggtttatggtg |
384 |
Q |
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| T |
42116629 |
ccaattccaatctatttgttaaactcgaacaaaataaatatttaacaactagctttacaagataacacatcttggtttatggtg |
42116712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 30020807 - 30020878
Alignment:
| Q |
267 |
taaagtaaattaagtggcactttttcatttaattccaattcctttctatttgttaaactcaaacaaaataaat |
339 |
Q |
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| T |
30020807 |
taaagtcaattaagtagcactttttcatg-aattccaattccaatctatttgttaaactgaaacaaaataaat |
30020878 |
T |
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