View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_50 (Length: 204)
Name: NF10587_low_50
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_50 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 11672275 - 11672430
Alignment:
| Q |
20 |
caacgtgctgacacggggattgtcaacattagccgccaaccatgagttttgaaatatttgacagacaacaaaaataaggtgacaaagggacgccacaatg |
119 |
Q |
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| T |
11672275 |
caacgtgctgacacggggattgtcaacattagccgccaaccatgagttttgaaatatttgacagacaacaaaaataaggtgacaaagggacgccacaaca |
11672374 |
T |
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| Q |
120 |
aagtatatatagcctttcatctgattcatatattgtaaatacggcctcaatcctaa |
175 |
Q |
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| T |
11672375 |
aagtatatatagcctttcatctgattcatatattgtaaatacggcctcaatcctaa |
11672430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 11708741 - 11708890
Alignment:
| Q |
20 |
caacgtgctgacacggggattgtcaacattagccgccaaccatgagttttgaaatatttgacagacaacaaaaataaggtgacaaagggacgccacaatg |
119 |
Q |
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||||||||||||||| |||||||| |||||||| |||| |||||||||||| ||||| ||||| || | |||||||||||||| |||||| ||||| | | |
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| T |
11708741 |
caacgtgctgacacgaggattgtctacattagcagccatccatgagttttgcaatatctgacaaaccagaaaaataaggtgaccaagggaagccacgaag |
11708840 |
T |
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| Q |
120 |
aagtatatatagcctttcatctgattcatatattgtaaatacggcctcaa |
169 |
Q |
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| T |
11708841 |
aagaatatatagcctttcatctgattcagatattgtaagtacggcttcaa |
11708890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 11619942 - 11619793
Alignment:
| Q |
24 |
gtgctgacacggggattgtcaacattagccgccaaccatgagttttgaaatatttgacagacaacaaaaataaggtgacaaagggacgccacaatgaagt |
123 |
Q |
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| T |
11619942 |
gtgctgacgaggggatcgtcaactttagcagccatccatgagttttgcagtatctgacaaaccacagaaaaaaggaaacaaagggaagccacagagaata |
11619843 |
T |
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| Q |
124 |
atatatagcctttcatctgattcatatattgtaaatacggcctcaatcct |
173 |
Q |
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| T |
11619842 |
atatatagcctttcgtccgatttagatattgtaagtaaggcttcaatcct |
11619793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 11664793 - 11664656
Alignment:
| Q |
20 |
caacgtgctgacacggggattgtcaacattagccgccaaccatgagttttgaaatatttgacagacaacaaaaataaggtgacaaagggacgccacaatg |
119 |
Q |
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|||| |||||||||| ||||||||||| ||||| |||| ||| ||||||| | ||||||||| || |||||||||||||||| || | | |||| | |
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| T |
11664793 |
caacatgctgacacgaggattgtcaacgttagcagccatccacaagttttgtagtatttgacaaaccacaaaaataaggtgactaaatgtagaaacaaag |
11664694 |
T |
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| Q |
120 |
aagtatatatagcctttcatctgattcatatattgtaa |
157 |
Q |
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| T |
11664693 |
aagaaaatatagcctttcatattattcaaatattgtaa |
11664656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 11630362 - 11630478
Alignment:
| Q |
41 |
gtcaacattagccgccaaccatgagttttgaaatatttgacagacaacaaaaataaggtgacaaagggacgccacaatgaagtatatatagcctttcatc |
140 |
Q |
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|||||| ||||| |||| ||| |||||||| ||||| ||||| ||||| || | ||||||||||||||| |||| |||| |||| |||||| ||||| |
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| T |
11630362 |
gtcaactttagcagccatccacgagttttgcaatatctgacaaacaacgaagagaaggtgacaaagggatgccaatgagaagaatatgtagcctctcatc |
11630461 |
T |
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| Q |
141 |
tgattcatatattgtaa |
157 |
Q |
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| T |
11630462 |
tcattcaaatattgtaa |
11630478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 6905 - 7054
Alignment:
| Q |
24 |
gtgctgacacggggattgtcaacattagccgccaaccatgagttttgaaatatttgacagacaacaaaaataaggtgacaaagggacgccacaatgaagt |
123 |
Q |
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||||||||| |||||||||||||||||| |||| ||| |||||||| ||||| ||||| | |||||||||||||||||||| | ||| | ||| |
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| T |
6905 |
gtgctgacaaggggattgtcaacattagaagccatccacgagttttgcaatatctgacaaaacacaaaaataaggtgacaaagaaaagccgtagagaata |
7004 |
T |
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| Q |
124 |
atatatagcctttcatctgattcatatattgtaaatacggcctcaatcct |
173 |
Q |
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|||||||||||||||||||||||| ||||||||| || ||| |||||||| |
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| T |
7005 |
atatatagcctttcatctgattcagatattgtaagtaaggcttcaatcct |
7054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 16391903 - 16392039
Alignment:
| Q |
21 |
aacgtgctgacacggggattgtcaacattagccgccaaccatgagttttgaaatatttgacagacaacaaaaataaggtgacaaagggacgccacaatga |
120 |
Q |
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|||||||||||||| |||||||| ||||| || |||| ||| ||||||| ||||| || || || | |||||||| ||||| ||| || ||||||| || |
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| T |
16391903 |
aacgtgctgacacgaggattgtctacatttgctgccatccacaagttttgcaatatctggcataccaaaaaaataaagtgaccaagtgaagccacaaaga |
16392002 |
T |
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| Q |
121 |
agtatatatagcctttcatctgattcatatattgtaa |
157 |
Q |
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|| |||||||||||||||||||||||| ||||||||| |
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| T |
16392003 |
agaatatatagcctttcatctgattcagatattgtaa |
16392039 |
T |
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Target: scaffold0196 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 14442 - 14388
Alignment:
| Q |
119 |
gaagtatatatagcctttcatctgattcatatattgtaaatacggcctcaatcct |
173 |
Q |
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|||| |||||||||||||||||||||||| ||||||||| || ||| |||||||| |
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| T |
14442 |
gaagaatatatagcctttcatctgattcagatattgtaagtaaggcttcaatcct |
14388 |
T |
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