View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10587_low_6 (Length: 403)
Name: NF10587_low_6
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_6 |
 | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 31273710 - 31274095
Alignment:
| Q |
1 |
ctttctgggtttggaagttgctcacttcaaacaaggtatctcactttgtcagagaaaatattgtctagatcttcttgctgattcaggtctcactcactct |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31273710 |
ctttctgggtttgcaagttgctcactccaaacaaggtatctcactttgtcagagaaaatattgtctagatcttcttgctgattcaggtctcactcactct |
31273809 |
T |
|
| Q |
101 |
aaacctatttccactccttctgacccttctgttaaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31273810 |
aaacctatttccactccttctgacccttctgttaaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggt |
31273909 |
T |
|
| Q |
201 |
tgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcatcattcttctgctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
31273910 |
tgttgtatcttaacacaacaagacctgatattacttttgttactcagcaattgagccagttcctcgctaagcgtacacaagttcatcattctgctgctat |
31274009 |
T |
|
| Q |
301 |
gagagtactcaaatatcttaaaacatctccaggctaaggtttattctttcctagagattcaactcttcagattttggggttctctg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31274010 |
gagagtactcaaatatcttaaaacatctttaggcaaaggtttattctttcctagagattcagctcttcagattttggggttctctg |
31274095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 26215183 - 26215554
Alignment:
| Q |
1 |
ctttctgggtttggaagttgctcacttcaaacaaggtatctcactttgtcagagaaaatattgtctagatcttcttgctgattcaggtctcactcactct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26215183 |
ctttctgggtttggaagttgctcactctaaacaaagtatctcactttgtcag-----------tctagatcttcttgctaattcaggtctcactcactct |
26215271 |
T |
|
| Q |
101 |
aaacctatttccactccttctgacccttctgttaaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggt |
200 |
Q |
| |
|
||| || ||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||||| | ||| ||||||||| ||||||||||||| |
|
|
| T |
26215272 |
aaatctgtttccactccttctgacccttctataaaacttcatcatgattccagtcaaccatacacagatgtctctccttacagaatgcttgttggtaggc |
26215371 |
T |
|
| Q |
201 |
tgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcatcattcttctgctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
26215372 |
tgttgtatcttaacacaacaagacctgatattacttttgttactcagcaattgagccagttcctcactaagcctacccaagttcatcattctgctgctat |
26215471 |
T |
|
| Q |
301 |
gagagtactcaaatatcttaaaacatctccaggctaaggtttattctttcctagagattcaactcttcagattttggggttct |
383 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26215472 |
gagagtgctcaaatatcttaaaacatctctaggaaaaggtttattttttcctagagattcagctcttcagattttggggttct |
26215554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 37737459 - 37737098
Alignment:
| Q |
8 |
ggtttggaagttgctcacttcaaacaaggtatctcactttgtcagagaaaatattgtctagatcttcttgctgattcaggtctcactcactctaaaccta |
107 |
Q |
| |
|
||||| || |||||||| | |||||||| |||||| | ||||| ||||| |||||||| ||| | ||||||||||||||||| | |||||||| |
|
|
| T |
37737459 |
ggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtctggatttgcttgctgattcaggtcttgtcaattctaaaccag |
37737360 |
T |
|
| Q |
108 |
tttccactccttctgacccttctgttaaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggttgttgta |
207 |
Q |
| |
|
| ||||||||||| || |||||| | ||||| ||| |||||||||||| || || |||||| ||| |||| || || | ||||||| | ||||| |
|
|
| T |
37737359 |
tatccactccttcagatccttctatcaaactgcataatgattccagtcctccttatgaagatatttcttcttataggagattgattggtagactattgta |
37737260 |
T |
|
| Q |
208 |
tcttaacacaacaagacctgatattacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcatcattcttctgctatgagagta |
307 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| | | ||||||||||| || || ||| | ||||| |||||| | ||| | || ||||||||||||| |
|
|
| T |
37737259 |
tctgaacacaacaagacctgatattacctttataatacaacaattgagtcaatttctcaccaagccaacacaaatacattacactgctgctatgagagtg |
37737160 |
T |
|
| Q |
308 |
ctcaaatatcttaaaacatctccaggctaaggtttattctttcctagagattcaactcttca |
369 |
Q |
| |
|
|||| || || |||| | ||||||| |||| ||| ||||||| |||||||| ||| |||| |
|
|
| T |
37737159 |
ctcaggtacctcaaaagttgtccaggcaaaggattactctttcccagagattccactattca |
37737098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 370
Target Start/End: Complemental strand, 9802259 - 9802095
Alignment:
| Q |
206 |
tatcttaacacaacaagacctgatattacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcatcattcttctgctatgagag |
305 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||||||||||| || || ||| |||| || ||||| |||| | || |||||||||||| |
|
|
| T |
9802259 |
tatctcaatacaacaagacctgatattactttcattactcaacaattgagtcaatttctcactaaacccacacatattcactttactgctgctatgagag |
9802160 |
T |
|
| Q |
306 |
tactcaaatatcttaaaacatctccaggctaaggtttattctttcctagagattcaactcttcag |
370 |
Q |
| |
|
|||||| || ||||| | | ||||||| ||||||| ||||| |||||||||| || |||||| |
|
|
| T |
9802159 |
tactcaggtaccttaagagttgtccaggcaaaggtttgttcttcactagagattccacacttcag |
9802095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 49639458 - 49639396
Alignment:
| Q |
199 |
gttgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgagccagtt |
261 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
49639458 |
gttgttgtatcttacaactacaagacctgatattgcttttgttgttcaacaattgagccagtt |
49639396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 32611036 - 32611003
Alignment:
| Q |
336 |
aaggtttattctttcctagagattcaactcttca |
369 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
32611036 |
aaggtttattctttcctagagattcacctcttca |
32611003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 23374003 - 23373624
Alignment:
| Q |
7 |
gggtttggaagttgctcacttcaaacaaggtatctcactttgtcagagaaaatattgtctagatcttcttgctgattcaggtctcactcactctaaacct |
106 |
Q |
| |
|
|||||| ||||||||||| | |||| ||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
23374003 |
gggtttagaagttgctcattatcaacagggtatctcactttgtaagggaaaatattgtctagatattcttgctgatttaggtctcactcactctaaacct |
23373904 |
T |
|
| Q |
107 |
atttccactccttctgacccttctgttaaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggttgttgt |
206 |
Q |
| |
|
||||||||||| ||| ||||| | |||||||||| |||||||||||||| |||||| | || | ||||||||||||||| ||||||||||||||| |
|
|
| T |
23373903 |
gcttccactccttttgatacttctataaaacttcatcatgattccagtccac-atacacggtcatctttgcttacagaaggctagttggtaggttgttgc |
23373805 |
T |
|
| Q |
207 |
atcttaacacaacaagacctgatattacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcatcattcttctgctatgagagt |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||| |||||| || |||||||||| |
|
|
| T |
23373804 |
atcttaacacagcaagacctgatattacttttgttactcagcaattgagccagttccttaccaagcctacccaagttcaccattctgctactatgagagt |
23373705 |
T |
|
| Q |
307 |
actcaaatatcttaaaacatctccaggctaaggtttattctttcctagagattcaactcttcaga-ttttggggttctctg |
386 |
Q |
| |
|
|||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
23373704 |
gctcagatatcttaaaacatcttcaggcaaaggtttattatttcctagagattcaactcttcatatttttggggttctctg |
23373624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 134 - 357
Target Start/End: Original strand, 19428244 - 19428467
Alignment:
| Q |
134 |
aaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggttgttgtatcttaacacaacaagacctgatatta |
233 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| || |||||||| |||||| | |||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
19428244 |
aaacttcatcatgattccagtcccccatacacagacatttctgcttatagaaggttagttggtaggttgttgtatctcaacacaacaagacctgacatta |
19428343 |
T |
|
| Q |
234 |
cttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcatcattcttctgctatgagagtactcaaatatcttaaaacatctccagg |
333 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||| |||| | ||||||||||||| |||| || |||||| ||| |||| | |
|
|
| T |
19428344 |
cctttgtcactcaacaattgagccaattccttactaaacctactcaagttcaccattatgctgctatgagagtgctcaggtaccttaaatcatttccaag |
19428443 |
T |
|
| Q |
334 |
ctaaggtttattctttcctagaga |
357 |
Q |
| |
|
| | |||||||||||||||||||| |
|
|
| T |
19428444 |
caagggtttattctttcctagaga |
19428467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 53979841 - 53979903
Alignment:
| Q |
199 |
gttgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgagccagtt |
261 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
53979841 |
gttgttgtatcttacaactacaagacctgatattgcttttgttgttcaacaattgagccagtt |
53979903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 3004963 - 3005339
Alignment:
| Q |
8 |
ggtttggaagttgctcacttcaaacaaggtatctcactttgtcagagaaaatattgtctagatcttcttgctgattcaggtctcactcactctaaaccta |
107 |
Q |
| |
|
||||| || |||||||| | |||||||| |||||| | ||||| ||||| |||||||| ||| | ||||||||||||||||| | |||||||| |
|
|
| T |
3004963 |
ggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtctggatttgcttgctgattcaggtcttgtcaattctaaaccag |
3005062 |
T |
|
| Q |
108 |
tttccactccttctgacccttctgttaaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggttgttgta |
207 |
Q |
| |
|
| ||||||||||| || | |||| | ||||| ||| |||||||||||| | || |||||| ||| |||| || || | ||||||| | ||||| |
|
|
| T |
3005063 |
tatccactccttcagatcgttctatcaaactgcataatgattccagtcctctttatgaagatatttcttcttataggagattgattggtagactattgta |
3005162 |
T |
|
| Q |
208 |
tcttaacacaacaagacctgatattacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcatcattcttctgctatgagagta |
307 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| | || ||||||||||| || || ||| | ||||| |||||| | ||| | || ||||||||||||| |
|
|
| T |
3005163 |
tctgaacacaacaagacctgatattacctttataacacaacaattgagtcaatttctcaccaagccaacacaaatacattacactgctgctatgagagtg |
3005262 |
T |
|
| Q |
308 |
ctcaaatatcttaaaacatctccaggctaaggtttattctttcctagagattcaactcttcagattttggggttctc |
384 |
Q |
| |
|
|||| || || |||| | ||||||| |||| ||| ||||||| |||||||| ||| ||||| || |||| ||||| |
|
|
| T |
3005263 |
ctcaggtacctcaaaagttatccaggcaaaggattactctttcccagagattccactattcagcttctgggtttctc |
3005339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 321
Target Start/End: Complemental strand, 19813140 - 19813037
Alignment:
| Q |
218 |
acaagacctgatattacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcatcattcttctgctatgagagtactcaaatatc |
317 |
Q |
| |
|
||||||||| ||||||| ||| |||| ||||||||||||||||| ||| | || |||||||| |||| || | |||||||||||||||||| ||||| |
|
|
| T |
19813140 |
acaagacctaatattacctttattacacaacaattgagccagtttctctccaaacctacacacattcactataatgctgctatgagagtactcagatatc |
19813041 |
T |
|
| Q |
318 |
ttaa |
321 |
Q |
| |
|
|||| |
|
|
| T |
19813040 |
ttaa |
19813037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 18477788 - 18477861
Alignment:
| Q |
206 |
tatcttaacacaacaagacctgatattacttttgttactcaacaattgagccagttcctcgctaagcctacaca |
279 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||| |||||||||| || ||| ||| |||||||| |
|
|
| T |
18477788 |
tatctcaatacaactagacctgatattacttttgttactcaagaattgagccaatttctcaataaacctacaca |
18477861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 18480101 - 18480003
Alignment:
| Q |
160 |
atacacagatatatctgcttacagaaggcttgttggtaggttgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgagcca |
258 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| || || |||||| | || |||| ||||| || ||||| || ||||||||||||||||||| |
|
|
| T |
18480101 |
atacacagatattcctgcttacagaagacttgttgggagattattgtatttgaatgcaactagaccagacattaccttcattactcaacaattgagcca |
18480003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 23682280 - 23682641
Alignment:
| Q |
8 |
ggtttggaagttgctcacttcaaacaaggtatctcactttgtcagagaaaatattgtctagatcttcttgctgattcaggtctcactcactctaaaccta |
107 |
Q |
| |
|
||||| || |||||||| | ||||||||||| ||| | ||||| ||||| |||||||| ||| | ||||||||||||||||| | |||||||| |
|
|
| T |
23682280 |
ggtttagaggttgctcattctaaacaaggtatttcattgtgtcaaagaaagtattgtctggatttgcttgctgattcaggtcttgtcaattctaaaccag |
23682379 |
T |
|
| Q |
108 |
tttccactccttctgacccttctgttaaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggttgttgta |
207 |
Q |
| |
|
| ||||||||||| || |||||| | ||| | ||| |||||||||||| | || |||||| ||| |||| || || | ||||||| | ||||| |
|
|
| T |
23682380 |
tatccactccttcagatccttctatcaaattgcataatgattccagtcctctttatgaagatatttcttcttataggagattgattggtagactattgta |
23682479 |
T |
|
| Q |
208 |
tcttaacacaacaagacctgatattacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcatcattcttctgctatgagagta |
307 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| | || ||||||||||| || || ||| | ||||| |||||||| ||| | | ||||||||||||| |
|
|
| T |
23682480 |
tctgaacacaacaagacctgatattacctttataacacaacaattgagtcaatttctcaccaagccaacacaagtacattacattgctgctatgagagtg |
23682579 |
T |
|
| Q |
308 |
ctcaaatatcttaaaacatctccaggctaaggtttattctttcctagagattcaactcttca |
369 |
Q |
| |
|
|||| ||||| |||| | ||||||| |||| ||| | ||||| | |||||| ||| |||| |
|
|
| T |
23682580 |
ctcaggtatctcaaaagttgtccaggcaaaggattactttttcccaaagattccactattca |
23682641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 4939313 - 4939057
Alignment:
| Q |
30 |
aacaaggtatctcactttgtcagagaaaatattgtctagatcttcttgctgattcaggtctcactcactctaaacctatttccactccttctgacccttc |
129 |
Q |
| |
|
|||| |||||||| | ||| ||||||||||||||| | |||||| | ||||||||| |||| ||| | || |||||||||||||| |||||||| || || |
|
|
| T |
4939313 |
aacagggtatctctcattgccagagaaaatattgtttggatcttttggctgattcaagtcttacttattccaaacctatttccacaccttctgatccatc |
4939214 |
T |
|
| Q |
130 |
tgttaaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggttgttgtatcttaacacaacaagacctgat |
229 |
Q |
| |
|
||| || | |||| ||||||||| | || || ||| || ||| | || ||||| | ||| ||| | | || ||||| || | |||||||||| |
|
|
| T |
4939213 |
tgtgaagttacatcatgattccagctctccttatgaagacatttcttcatatagaagattgattgatagacttctataccttaataccaaaagacctgat |
4939114 |
T |
|
| Q |
230 |
attacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcat |
286 |
Q |
| |
|
|| ||||| ||||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
4939113 |
atcactttcattactcaacaacttagccagttcctcactaagcctacacaagttcat |
4939057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 5024403 - 5024147
Alignment:
| Q |
30 |
aacaaggtatctcactttgtcagagaaaatattgtctagatcttcttgctgattcaggtctcactcactctaaacctatttccactccttctgacccttc |
129 |
Q |
| |
|
|||| |||||||| | ||| ||||||||||||||| | |||||| | ||||||||| |||| ||| | || |||||||||||||| |||||||| || || |
|
|
| T |
5024403 |
aacagggtatctctcattgccagagaaaatattgtttggatcttttggctgattcaagtcttacttattccaaacctatttccacaccttctgatccatc |
5024304 |
T |
|
| Q |
130 |
tgttaaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggttgttgtatcttaacacaacaagacctgat |
229 |
Q |
| |
|
||| || | |||| ||||||||| | || || ||| || ||| | || ||||| | ||| ||| | | || ||||| || | |||||||||| |
|
|
| T |
5024303 |
tgtgaagttacatcatgattccagctctccttatgaagacatttcttcatatagaagattgattgatagacttctataccttaataccaaaagacctgat |
5024204 |
T |
|
| Q |
230 |
attacttttgttactcaacaattgagccagttcctcgctaagcctacacaagttcat |
286 |
Q |
| |
|
|| ||||| ||||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
5024203 |
atcactttcattactcaacaacttagccagttcctcactaagcctacacaagttcat |
5024147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 25531 - 25469
Alignment:
| Q |
199 |
gttgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgagccagtt |
261 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
25531 |
gttgttgtatcttacaactacaagacctgatattgcttttgttgttcaacaattgagccagtt |
25469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 18551027 - 18550969
Alignment:
| Q |
197 |
aggttgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgag |
255 |
Q |
| |
|
|||||| | ||||| || ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18551027 |
aggttgctttatctcaatacaacaagacctgatatcacttttgttactcaacaattgag |
18550969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 15194824 - 15194885
Alignment:
| Q |
200 |
ttgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgagccagtt |
261 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
15194824 |
ttgttgtatcttacaactacaagacctgatattgcttttgttgttcaacaattgagccagtt |
15194885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 19873107 - 19873207
Alignment:
| Q |
158 |
ccatacacagatatatctgcttacagaaggcttgttggtaggttgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgagcc |
257 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| || || |||||| | || |||| ||||| | ||||| || |||||||||||||||||| |
|
|
| T |
19873107 |
ccatacacagatattcctgcttacagaagacttgttgggagattattgtatttgaatgcaactagaccatacattaccttcattactcaacaattgagcc |
19873206 |
T |
|
| Q |
258 |
a |
258 |
Q |
| |
|
| |
|
|
| T |
19873207 |
a |
19873207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 18255691 - 18255752
Alignment:
| Q |
200 |
ttgttgtatcttaacacaacaagacctgatattacttttgttactcaacaattgagccagtt |
261 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
18255691 |
ttgttgtatcttacaactacaagacctgatattgcttttgttgttcaacaattgagtcagtt |
18255752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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