View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_7 (Length: 401)
Name: NF10587_low_7
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 4421462 - 4421846
Alignment:
| Q |
17 |
gaaaactcatccggtataggatcttcgagagcttttcaggttccacagattgttcctagtccgacaatagtggataatttggagaacattcctttgatta |
116 |
Q |
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| T |
4421462 |
gaaaacccatccggtataggatcttcgagagcttttcaggttccacagattgttcctagtccgacaatagtggagaatttggagaacattcctttgatta |
4421561 |
T |
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| Q |
117 |
acagcacctc-------gcttttcttgaattggaggccagtttgcaagccactgcagcagcggctcagcctgttgatgaaggtactgcgcaacaagtgac |
209 |
Q |
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| T |
4421562 |
acaacacctctaccgaggcttttcttgaattggaggccaatttgcaagccactgcagcagcggctcagcctattgatgaaggtactgcgcaacaagtgac |
4421661 |
T |
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| Q |
210 |
tgcaccgcctcaagaaattgtggtaagccgcattgatgtttctcaaaattctttctccatggcacttaataatattaccgatgatgtgattaggaatgaa |
309 |
Q |
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| T |
4421662 |
tgcatcgcctcaggaaattatggtaagccgcattgatgtttctcaatagtatttctccatgccacttaataatattaccgatgatgtgattaggaatgaa |
4421761 |
T |
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| Q |
310 |
cttgaggttatccatgaacatgaatctatattatcaccagtcacaaacaagactttggatgttagtggtattgttgctgcctatg |
394 |
Q |
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| T |
4421762 |
cttgaggttatccatgaacatgaatctatattatcaccagtcacaaacaagactttggatgttagtggtattgttgctgcatatg |
4421846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 14242440 - 14242304
Alignment:
| Q |
102 |
acattcctttgattaacagcacctc-------gcttttcttgaattggaggccagtttgcaagccactgcagcagcggctcagcctgttgatgaaggtac |
194 |
Q |
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| T |
14242440 |
acattcctttgattaacagcacctctaccgaggattttcttgaattggaggccaatttgcaagccactgcagtagtggctcagcctgttgatgaaggtac |
14242341 |
T |
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| Q |
195 |
tgcgcaacaagtgactgcaccgcctcaagaaattgtg |
231 |
Q |
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| T |
14242340 |
tgcgcaacaagtgactgcaccgcctcaggaaattgtg |
14242304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 10996190 - 10996277
Alignment:
| Q |
17 |
gaaaactcatccggtataggatcttcgagagcttttcaggttccacagattgttcctagtccgacaatagtggataatttggagaaca |
104 |
Q |
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| T |
10996190 |
gaaaacccatctggtataggatctttgagagcttttcaggatccacagattgttcctagtccgacagtagtggagaatttggagaaca |
10996277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 14242564 - 14242478
Alignment:
| Q |
17 |
gaaaactcatccggtataggatcttcgagagcttttcaggttccacagattgttcctagtccgacaatagtggataatttggagaac |
103 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||| | |||||||||| |
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| T |
14242564 |
gaaaacccatccggtataggatctttgagagcttttcaggttccacatattgtttctagtccgacagtagtggagattttggagaac |
14242478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 10996345 - 10996422
Alignment:
| Q |
126 |
cgcttttcttgaattggaggccagtttgcaagccactgcagcagcggctcagcctgttgatgaaggtactgcgcaaca |
203 |
Q |
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|||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10996345 |
cgcttttcttgaattggaggacaattttcaaaccactgcagcagcggctcagcctgttgatgaaggtactacgcaaca |
10996422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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