View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10587_low_8 (Length: 391)
Name: NF10587_low_8
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 35673808 - 35673453
Alignment:
| Q |
19 |
cacagaaacccatccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35673808 |
cacagaaacccatccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaa |
35673709 |
T |
|
| Q |
119 |
ccgggtttatttcctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35673708 |
ccgggtttatttcctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatca |
35673609 |
T |
|
| Q |
219 |
acacatcaataatattcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35673608 |
acacatcaataatattcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtc |
35673509 |
T |
|
| Q |
319 |
gaactggaaccggaacgactcaacgagtttttcttcgtcgttgtcgttgtcacctt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35673508 |
gaactggaaccggaacgactcaacgagtttttcttcgtcgttgtcgttgtcacctt |
35673453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University