View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10587_low_9 (Length: 382)
Name: NF10587_low_9
Description: NF10587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10587_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 38275826 - 38275480
Alignment:
| Q |
17 |
aaaaagtatttacactactagaaactcacgtttttcctgcggaaattattccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaa |
116 |
Q |
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| T |
38275826 |
aaaaattatttacactactagaaactcacgtttttcctgcggaaattattccacaggaattcctgagtattttgctgccatttccttt--ttgaacgaaa |
38275729 |
T |
|
| Q |
117 |
tttcctgcagtaatattaccttttaactcttttaatgtaaacaaaactttgttagtattaatcttcacaccgtatgtttttcaagtcgaaggcactgcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275728 |
tttcctgcagtaatattaccttttaactcttttaatgtaaacaaaactttgttagtattaatcttcacaccgtatgtttttcaagtcgaaggcactgcaa |
38275629 |
T |
|
| Q |
217 |
gatacaagggaactttttcagcgttactgtgatgagaaagggataaaattacttcaagatctgcatctgcacttgtatggggtcttttatatgtgaaacc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38275628 |
gatacaagggaactttttcagcgttactgtgatgagaaagggataaaattacttcaagatc------tgcacttgtatggggtcttttatatgtgaaacc |
38275535 |
T |
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| Q |
317 |
tgtgatcacattgcagaatattcaatttcttatttatcgccaaaggctctcctat |
371 |
Q |
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| T |
38275534 |
tgtgatcacattgcagaatattcaatttcttatttatcgccaaaggctctcctat |
38275480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 11753688 - 11753599
Alignment:
| Q |
49 |
tttcctgcggaaattattccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatttcctgcag-taatattacctt |
138 |
Q |
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| T |
11753688 |
tttccagcggaagttattccgcaggaattcctgaggattttgctaccatttcttttac-tgaacgaaatttcctgcagataatatttcctt |
11753599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 11815399 - 11815464
Alignment:
| Q |
55 |
gcggaaattattccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatttc |
120 |
Q |
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|||||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||||||| |
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| T |
11815399 |
gcggaaattattccgcaggaattcctgaggattttactgtcatttcttttacttgaacaaaatttc |
11815464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 8964863 - 8964798
Alignment:
| Q |
206 |
aggcactgcaagatacaagggaactttttcagcgttactgtgatgagaaagggataaaattacttc |
271 |
Q |
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| T |
8964863 |
aggcaccgcaagagacaaaggaactttttcagtgttactctgatgagaaaaggatgaaattacttc |
8964798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 32235891 - 32235839
Alignment:
| Q |
74 |
aattcctgagtattttgctgccatttcctttacttgaacgaaatttcctgcag |
126 |
Q |
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|||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
32235891 |
aattcctgaggattttgctgccattttctttactctaacgaaatttcctgcag |
32235839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 39917142 - 39917081
Alignment:
| Q |
65 |
ttccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatttcctgcag |
126 |
Q |
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|||| |||||| |||| || ||||| ||| |||||||||| ||||||||||||||||||||| |
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| T |
39917142 |
ttccgcaggaagtcctaaggattttactgtcatttcctttgcttgaacgaaatttcctgcag |
39917081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 36087050 - 36087009
Alignment:
| Q |
49 |
tttcctgcggaaattattccacaggaattcctgagtattttg |
90 |
Q |
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|||||||||||||||| ||||||||||| |||||| |||||| |
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| T |
36087050 |
tttcctgcggaaattaatccacaggaatgcctgaggattttg |
36087009 |
T |
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