View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_1 (Length: 642)
Name: NF10588_1
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 11 - 642
Target Start/End: Original strand, 11215570 - 11216184
Alignment:
| Q |
11 |
attattctcacctaaaagtatgttttaaatatcaatctagaaagttcaatcgattgaattgtgaacagacgctgcttatggttttgttatttgagctgtt |
110 |
Q |
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| T |
11215570 |
attattctcacctaaaagtatgttttaaatatcaatccagaaagttcaatcgattgaattgtgaacagacgctgcttatggttttgttatttgagctgtt |
11215669 |
T |
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| Q |
111 |
caactgtggtttcgtcctgatttgagctgtttaaagaagttgaactatgatccagaggtctcgttggtttaatatccggtttagtttttaaaatattgcc |
210 |
Q |
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| T |
11215670 |
caactgtggtttcgtcctgatttgagctgtttaaagaagttgaactatgatccagaggtctcgttggtttgatatccggtttagtttttaaaatattgcc |
11215769 |
T |
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| Q |
211 |
aaaagctgatggctacaaaattgtgcaaatctttctctgcaactttataacttaaagctgtgtcatacactgctactacataggatcatgcaaatagaat |
310 |
Q |
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| T |
11215770 |
aaaagctgatggctacaaaattctgcaaatctttctctgcaactttataacttaaagctgtgtcatacactgctacaacataggatcatgcaaatagaat |
11215869 |
T |
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| Q |
311 |
aagcttgattcattgtaagttttgcagcatttgaatccatttagctttatttcatcaaatcaaccataccaagaacggcagaattataagtttaagagtg |
410 |
Q |
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| T |
11215870 |
aagcttgattcattgtaagttttgcagcatttgaatccatttagctttatttcatcaaatcaaccataccaagaacagcagaattataagtttaagagtg |
11215969 |
T |
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| Q |
411 |
atttattacttttcatattttagcaactagc-aaagctacagtaatgattttttact-tatcatgcagtggctaatcacatgatctaagggttaaataat |
508 |
Q |
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| T |
11215970 |
atttattacttttcatattttagcaactagcaaaagctacagtaatgattttttactgtatcatgcagtggctaatcacatgatctaagggttaaataat |
11216069 |
T |
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| Q |
509 |
gaaaagtaggattagaggaatgaagaaaaaattgcaatcatagccagtgtggaatacttgtattgttggttgttgactgtatctagttgctaacagacag |
608 |
Q |
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| T |
11216070 |
gaaaagtaggattagaggaatgaagaaaaaattgcaatcatagccagtgtggaatact-------------------tgtatctagttgctaacagacag |
11216150 |
T |
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| Q |
609 |
ttaaccatgtgatgaaatctttccaaagttgttt |
642 |
Q |
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| T |
11216151 |
ttaaccatgtgatgaaatctttccaaagttgttt |
11216184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 8087877 - 8087934
Alignment:
| Q |
96 |
gttatttgagctgttcaactgtggtttcgtcctgatttgagctgtttaaagaagttga |
153 |
Q |
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| T |
8087877 |
gttatttgagcggttcgactgtggtttcatcctagtttgagcggtttaaagcagttga |
8087934 |
T |
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