View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_15 (Length: 372)
Name: NF10588_15
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_15 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 26653674 - 26653355
Alignment:
| Q |
51 |
taacgtggaagcat--cccattggagcaaaaacaattagtgaacaactactctcccgacgaaggatgaaaaccacaacttagaaaataggcttgcaacct |
148 |
Q |
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| T |
26653674 |
taacgtggaagcatatcccattggatcacaaacaattagtgaataactactctcccgacgaaggatgaaaaccacaacttagaaaataggcttgcaacct |
26653575 |
T |
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| Q |
149 |
tactttcaattcattcactcaatattcaagttagagaaagaaagattaagagagagtgaaaaggcagaagtgaggtggtaacaaaggcttgtagatcaag |
248 |
Q |
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| T |
26653574 |
tactttcaattcattcactcaatattcaagttagagaaagaaagattaagagagagtgaaaaggcagaagcgaggtggtaacaaaggcttgtagatcaag |
26653475 |
T |
|
| Q |
249 |
tcgacttatgcaacatatcaaaatcccttgattgatcttttgatttggggcatgctagaatcatacatcccttgtaaggaaaacaggcaagggcacttgt |
348 |
Q |
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| T |
26653474 |
tcgacttatgcaacatatcaaaatcccttgattgatcttttgacttggggcatgctagaatcagacatcccttataaggaaaacaggcaagggtatttgt |
26653375 |
T |
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| Q |
349 |
cgggctacgtttacaatcac |
368 |
Q |
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| T |
26653374 |
cggattaggtttacaatcac |
26653355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 1197627 - 1197589
Alignment:
| Q |
22 |
catcataaacatggtcctttaactcaacctaacgtggaa |
60 |
Q |
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| T |
1197627 |
catcgtaaacatggtcctttaactcaacctaacgtggaa |
1197589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 29275593 - 29275719
Alignment:
| Q |
140 |
ttgcaaccttactttcaattcattcactcaatattcaagttagagaaagaaagattaagagagagtgaaaaggcagaagtgaggtggtaa---caaaggc |
236 |
Q |
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||||||||| |||| ||||||| ||| |||||| ||||||||||||||| ||| ||| |||||||| ||| ||| |||| ||| | || ||||| | |
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| T |
29275593 |
ttgcaacctcacttccaattcactcattcaatactcaagttagagaaagcaagcttatgagagagttaaagggctgaagcagggtagaaacatcaaagcc |
29275692 |
T |
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| Q |
237 |
ttgtagatcaagtcgacttatgcaaca |
263 |
Q |
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| T |
29275693 |
ttgtagatcaagtcgactgatgcaaca |
29275719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 7480173 - 7480225
Alignment:
| Q |
136 |
aggcttgcaaccttactttcaattcattcactcaatattcaagttagagaaag |
188 |
Q |
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| T |
7480173 |
aggcttgaagcctcactttcaattcattcattcaatattcaacttagagaaag |
7480225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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