View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_18 (Length: 326)
Name: NF10588_18
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_18 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 38741828 - 38741646
Alignment:
| Q |
4 |
atgtcgaagaatattacgcaaatttggaagtagcaaccataagaaatcaaatcgaggaaagtgatgagtgaacaacgtcaaaattcaaatatggcatgga |
103 |
Q |
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| T |
38741828 |
atgttgaagaatattacacaaatttggaagtagcaaccataagaaatcaaatcgaggaaagtgatgagtgaacaacgtcaaaattcaaatatggcatgga |
38741729 |
T |
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| Q |
104 |
ttacaaaataagagatatggtggagttacaaagtcatatgaatatggaggaattatttcatcaagattctaaggtggagcaac |
186 |
Q |
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| T |
38741728 |
ttacaaaataagagatataatggagttacaaagtcatatgaatatggaggaattatttcatcaagattctaaggtggagcaac |
38741646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 221 - 308
Target Start/End: Complemental strand, 38741611 - 38741524
Alignment:
| Q |
221 |
tcagtctacaacacctccaagaatgaggtgcctacaactaatcctaacctaaaagttaaaaaagttaattttaactcaaatccattta |
308 |
Q |
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| T |
38741611 |
tcagtcttcaacacctccaagaatgaggtgcctacaactaatcctaacctaaaagttaaaaaagttaattttaactcaaatccattta |
38741524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 38784698 - 38784734
Alignment:
| Q |
4 |
atgtcgaagaatattacgcaaatttggaagtagcaac |
40 |
Q |
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| T |
38784698 |
atgttgaagaatattacacaaatttggaagtagcaac |
38784734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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